RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 ARHGAP12Q8IWW6 846 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 FBXO25Q8TCJ0 367 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 TFB1MQ8WVM0 346 aaKnown RBP19.14■□□□□ 0.65
CLN3-206ENST00000360019 MRPL38Q96DV4 380 aaKnown RBP19.14■□□□□ 0.65
CLN3-206ENST00000360019 SNF8Q96H20 258 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 RPRD1AQ96P16 312 aaPredicted RBP19.14■□□□□ 0.65
CLN3-206ENST00000360019 ARFGAP3Q9NP61 516 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 WHRNQ9P202 907 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 FAM153AQ9UHL3 310 aa19.14■□□□□ 0.65
CLN3-206ENST00000360019 NUP205Q92621 2012 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 EYSQ5T1H1 3165 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 TRAV19A0A0A6YYK7 116 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 RHOQP17081 205 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 RPL22P35268 128 aaKnown RBP19.13■□□□□ 0.65
CLN3-206ENST00000360019 PLTPP55058 493 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 GALNT2Q10471 571 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 GPS1Q13098 491 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 TEAD2Q15562 447 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 P3H1Q32P28 736 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 MAP9Q49MG5 647 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 PRSS36Q5K4E3 855 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 TFAP2DQ7Z6R9 452 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 CIR1Q86X95 450 aaPredicted RBP19.13■□□□□ 0.65
CLN3-206ENST00000360019 C12orf76Q8N812 135 aaPredicted RBP19.13■□□□□ 0.65
CLN3-206ENST00000360019 GDAP1L1Q96MZ0 367 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 TMEM248Q9NWD8 314 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 ZNF446Q9NWS9 450 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 ZNF212Q9UDV6 495 aa19.13■□□□□ 0.65
CLN3-206ENST00000360019 F5H5T6 163 aa19.12■□□□□ 0.65
CLN3-206ENST00000360019 PPP1R12AO14974 1030 aaPredicted RBP19.12■□□□□ 0.65
CLN3-206ENST00000360019 PFKLP17858 780 aa19.12■□□□□ 0.65
CLN3-206ENST00000360019 C5orf22Q49AR2 442 aa19.12■□□□□ 0.65
CLN3-206ENST00000360019 GPR158Q5T848 1215 aa19.12■□□□□ 0.65
CLN3-206ENST00000360019 ELMSAN1Q6PJG2 1045 aa19.12■□□□□ 0.65
CLN3-206ENST00000360019 LGI2Q8N0V4 545 aa19.12■□□□□ 0.65
CLN3-206ENST00000360019 LEMD2Q8NC56 503 aa19.12■□□□□ 0.65
CLN3-206ENST00000360019 HTR3CQ8WXA8 447 aa19.12■□□□□ 0.65
CLN3-206ENST00000360019 ART4Q93070 314 aa19.12■□□□□ 0.65
CLN3-206ENST00000360019 PRICKLE1Q96MT3 831 aaPredicted RBP19.12■□□□□ 0.65
CLN3-206ENST00000360019 ADAM7Q9H2U9 754 aa19.12■□□□□ 0.65
CLN3-206ENST00000360019 STOML2Q9UJZ1 356 aa19.12■□□□□ 0.65
CLN3-206ENST00000360019 SCAMP3O14828 347 aaKnown RBP19.11■□□□□ 0.65
CLN3-206ENST00000360019 NCAM2O15394 837 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 PAPLNO95428 1278 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 ITIH2P19823 946 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 GARSP41250 739 aaKnown RBP19.11■□□□□ 0.65
CLN3-206ENST00000360019 AP1B1Q10567 949 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 AFMIDQ63HM1 303 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 HEATR6Q6AI08 1181 aaKnown RBP19.11■□□□□ 0.65
CLN3-206ENST00000360019 EMBQ6PCB8 327 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 TMC5Q6UXY8 1006 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 Q6ZNB5 142 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 LZTR1Q8N653 840 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 CCNYQ8ND76 341 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 DEPDC1BQ8WUY9 529 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP19.11■□□□□ 0.655e-8■■■■■ 65.3
CLN3-206ENST00000360019 HDAC11Q96DB2 347 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 P2RY11Q96G91 374 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 CDCA3Q99618 268 aaPredicted RBP19.11■□□□□ 0.65
CLN3-206ENST00000360019 SMG9Q9H0W8 520 aaKnown RBP19.11■□□□□ 0.65
CLN3-206ENST00000360019 NOL6Q9H6R4 1146 aaKnown RBP19.11■□□□□ 0.65
CLN3-206ENST00000360019 DNALI1O14645 258 aaPredicted RBP19.11■□□□□ 0.65
CLN3-206ENST00000360019 MX2P20592 715 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 DDX6P26196 483 aaKnown RBP eCLIP19.11■□□□□ 0.65
CLN3-206ENST00000360019 ITGA8P53708 1063 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 PPIDQ08752 370 aaKnown RBP19.11■□□□□ 0.65
CLN3-206ENST00000360019 CALCOCO2Q13137 446 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 ADGRF1Q5T601 910 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 IZUMO3Q5VZ72 239 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 CFAP52Q8N1V2 620 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 SLC39A8Q9C0K1 460 aa19.11■□□□□ 0.65
CLN3-206ENST00000360019 TRDMT1O14717 391 aaKnown RBP19.1■□□□□ 0.65
CLN3-206ENST00000360019 LATS1O95835 1130 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 RGS19P49795 217 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 SGSHP51688 502 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 RHBDF2Q6PJF5 856 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 POTEHQ6S545 545 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 ARHGAP36Q6ZRI8 547 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 UMODL1-AS1Q8N2C9 162 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 CCDC110Q8TBZ0 833 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 SMG7Q92540 1137 aaKnown RBP19.1■□□□□ 0.65
CLN3-206ENST00000360019 CAVIN3Q969G5 261 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 FMO2Q99518 471 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 IGFLR1Q9H665 355 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 TASP1Q9H6P5 420 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 SFXN1Q9H9B4 322 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 ARHGAP26Q9UNA1 814 aa19.1■□□□□ 0.65
CLN3-206ENST00000360019 ZFP37Q9Y6Q3 630 aaPredicted RBP19.1■□□□□ 0.65
CLN3-206ENST00000360019 DFFAO00273 331 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 GLP2RO95838 553 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 RPS24P62847 133 aaKnown RBP19.09■□□□□ 0.65
CLN3-206ENST00000360019 ARHGAP15Q53QZ3 475 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 CMTM8Q8IZV2 173 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 TAB3Q8N5C8 712 aaPredicted RBP19.09■□□□□ 0.65
CLN3-206ENST00000360019 TTC16Q8NEE8 873 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 BRD8Q9H0E9 1235 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 CFAP97Q9P2B7 532 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 CCL26Q9Y258 94 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 C5orf60A6NFR6 353 aa19.09■□□□□ 0.65
CLN3-206ENST00000360019 KCNK1O00180 336 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 120.9 ms