RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 MSLNQ13421 630 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 KCNA10Q16322 511 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 CBWD3Q5JTY5 395 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 CBWD5Q5RIA9 395 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 ZNF621Q6ZSS3 439 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 SLC4A11Q8NBS3 891 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 SLC12A4Q9UP95 1085 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 RGSL1A5PLK6 1076 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 GLRBP48167 497 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 POLR2LP62875 67 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 ITIH5Q86UX2 942 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 CRISPLD1Q9H336 500 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 DDIT4Q9NX09 232 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 SRP68Q9UHB9 627 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 SLC24A2Q9UI40 661 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 BAZ2BQ9UIF8 2168 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 IFNGP01579 166 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 DENND5AQ6IQ26 1287 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 ZNF276Q8N554 614 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 ZNF184Q99676 751 aaPredicted RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 RUSC1Q9BVN2 902 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 RBM12Q9NTZ6 932 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 THAP1Q9NVV9 213 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 TOR4AQ9NXH8 423 aa14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 UBQLN1Q9UMX0 589 aaKnown RBP14.19□□□□□ -0.14
CCDC88A-201ENST00000263630 UPP2O95045 317 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 PRH1P02810 166 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 OGNP20774 298 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 TCEAL6Q6IPX3 200 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 OR2L5Q8NG80 312 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 FATE1Q969F0 183 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 TESCQ96BS2 214 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 NIF3L1Q9GZT8 377 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 RLN1P04808 185 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 RPL4P36578 427 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 GRAPQ13588 217 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 FBXO39Q8N4B4 442 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 CARNMT1Q8N4J0 409 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 GRAPLQ8TC17 118 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 TDRKHQ9Y2W6 561 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 ZBTB6Q15916 424 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 FAR1Q8WVX9 515 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 C12orf66Q96MD2 445 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 ABCB10Q9NRK6 738 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 M0QYT0 321 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 OR5F1O95221 314 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 SERPINA3P01011 423 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 ETS1P14921 441 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 TCHHL1Q5QJ38 904 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 BTBD10Q9BSF8 475 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 GH1P01241 217 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 ME2P23368 584 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 GJA8P48165 433 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 TAF6P49848 677 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 CASP5P51878 434 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 KCNMA1Q12791 1236 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 PRR23BQ6ZRT6 265 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 FBXO32Q969P5 355 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 KLF6Q99612 283 aaPredicted RBP14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 KCNIP3Q9Y2W7 256 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 URADA6NGE7 173 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 H3BNH8 94 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 PSMD11O00231 422 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 TEX47Q8TBZ9 253 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 MASTLQ96GX5 879 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 GPER1Q99527 375 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 TAS2R13Q9NYV9 303 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 PRKAB2O43741 272 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 CXCR2P25025 360 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 OVGP1Q12889 678 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 PEX6Q13608 980 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 PTPAQ15257 358 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 USP41Q3LFD5 358 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 PHF10Q8WUB8 498 aaKnown RBP14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 AIF1LQ9BQI0 150 aa14.18□□□□□ -0.14
CCDC88A-201ENST00000263630 DGCR6Q14129 220 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 SH3RF3Q8TEJ3 882 aaPredicted RBP14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 SLC39A8Q9C0K1 460 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 C3orf18Q9UK00 162 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 FBXO10Q9UK96 956 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 HOXA2O43364 376 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 ZNF7P17097 686 aaPredicted RBP14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 MAPK7Q13164 816 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 KCTD21Q4G0X4 260 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 PAGE2Q7Z2X7 111 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 KIAA1257Q9ULG3 409 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 AP4E1Q9UPM8 1137 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 LAMC1P11047 1609 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 MYH6P13533 1939 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 SAGE2PA6NJ88 616 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 ERI2A8K979 691 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 ATP6V1G2O95670 118 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 UGT2B15P54855 530 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 SPAG16Q8N0X2 631 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 CCDC86Q9H6F5 360 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 TCHHQ07283 1943 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 CYP2A6P11509 494 aaPredicted RBP14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 RPL10AP62906 217 aaKnown RBP14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 ABRQ12979 859 aa14.17□□□□□ -0.14
CCDC88A-201ENST00000263630 TDRD1Q9BXT4 1180 aaKnown RBP14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms