RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 HERVK_113Q902F9 699 aa18.67■□□□□ 0.58
VIM-201ENST00000224237 SPATA13Q96N96 652 aa18.67■□□□□ 0.58
VIM-201ENST00000224237 FRMD8Q9BZ67 464 aaPredicted RBP18.67■□□□□ 0.58
VIM-201ENST00000224237 RXFP1Q9HBX9 757 aa18.67■□□□□ 0.58
VIM-201ENST00000224237 GOLGA6AQ9NYA3 693 aa18.67■□□□□ 0.58
VIM-201ENST00000224237 TCRBV7S3A2A0A539 114 aa18.66■□□□□ 0.58
VIM-201ENST00000224237 SLC12A8A0AV02 714 aa18.66■□□□□ 0.58
VIM-201ENST00000224237 OPHN1O60890 802 aa18.66■□□□□ 0.58
VIM-201ENST00000224237 ATP2A2P16615 1042 aaKnown RBP18.66■□□□□ 0.58
VIM-201ENST00000224237 ATP5C1P36542 298 aaKnown RBP18.66■□□□□ 0.58
VIM-201ENST00000224237 GARSP41250 739 aaKnown RBP18.66■□□□□ 0.58
VIM-201ENST00000224237 KRT71Q3SY84 523 aa18.66■□□□□ 0.58
VIM-201ENST00000224237 ANKRD20A2Q5SQ80 823 aa18.66■□□□□ 0.58
VIM-201ENST00000224237 FAM182AQ5T1J6 154 aa18.66■□□□□ 0.58
VIM-201ENST00000224237 UBAP2Q5T6F2 1119 aaKnown RBP18.66■□□□□ 0.58
VIM-201ENST00000224237 ANKRD20A1Q5TYW2 823 aa18.66■□□□□ 0.58
VIM-201ENST00000224237 PIK3R6Q5UE93 754 aa18.66■□□□□ 0.58
VIM-201ENST00000224237 ANKRD20A3Q5VUR7 823 aa18.66■□□□□ 0.58
VIM-201ENST00000224237 SPRED2Q7Z698 418 aa18.66■□□□□ 0.58
VIM-201ENST00000224237 PDIK1LQ8N165 341 aa18.66■□□□□ 0.58
VIM-201ENST00000224237 KLHL23Q8NBE8 558 aa18.66■□□□□ 0.58
VIM-201ENST00000224237 NETO2Q8NC67 525 aa18.66■□□□□ 0.58
VIM-201ENST00000224237 SP7Q8TDD2 431 aaPredicted RBP18.66■□□□□ 0.58
VIM-201ENST00000224237 HBS1LQ9Y450 684 aaKnown RBP18.66■□□□□ 0.58
VIM-201ENST00000224237 ZNF840PA6NDX5 716 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 HMGB1P1B2RPK0 211 aaPredicted RBP18.65■□□□□ 0.58
VIM-201ENST00000224237 RNF103O00237 685 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 MTSS1O43312 755 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 TLL1O43897 1013 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 CA8P35219 290 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 TWF1Q12792 350 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 PDIA2Q13087 525 aaKnown RBP18.65■□□□□ 0.58
VIM-201ENST00000224237 NUGGCQ68CJ6 796 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 KLHDC10Q6PID8 442 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 TP53INP2Q8IXH6 220 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 ZBED8Q8IZ13 594 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 EXOC4Q96A65 974 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 ATP6V1G3Q96LB4 118 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 C9orf72Q96LT7 481 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 TMEM109Q9BVC6 243 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 ETNK1Q9HBU6 452 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 TRPM5Q9NZQ8 1165 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 DNMT3LQ9UJW3 386 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 INSL5Q9Y5Q6 135 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 RANBP2P49792 3224 aaKnown RBP18.65■□□□□ 0.58
VIM-201ENST00000224237 CHD7Q9P2D1 2997 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 E7ESA3 106 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 ALOX15BO15296 676 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 ABHD2P08910 425 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 FDFT1P37268 417 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 PPP3CCP48454 512 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 TUBP50607 506 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 ZNF33AQ06730 810 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 MS4A13Q5J8X5 152 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 HECTD3Q5T447 861 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 ARTNQ5T4W7 220 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 NACA2Q9H009 215 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 MTIF3Q9H2K0 278 aaKnown RBP18.65■□□□□ 0.58
VIM-201ENST00000224237 CENPHQ9H3R5 247 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 DONSONQ9NYP3 566 aa18.65■□□□□ 0.58
VIM-201ENST00000224237 PPARGC1AQ9UBK2 798 aaKnown RBP18.65■□□□□ 0.58
VIM-201ENST00000224237 UXTQ9UBK9 157 aaPredicted RBP18.65■□□□□ 0.58
VIM-201ENST00000224237 METTL18O95568 372 aa18.64■□□□□ 0.57
VIM-201ENST00000224237 APRTP07741 180 aa18.64■□□□□ 0.57
VIM-201ENST00000224237 TPSB2P20231 275 aa18.64■□□□□ 0.57
VIM-201ENST00000224237 EPHB3P54753 998 aa18.64■□□□□ 0.57
VIM-201ENST00000224237 COG7P83436 770 aa18.64■□□□□ 0.57
VIM-201ENST00000224237 GAD2Q05329 585 aa18.64■□□□□ 0.57
VIM-201ENST00000224237 PLD1Q13393 1074 aa18.64■□□□□ 0.57
VIM-201ENST00000224237 SEMA5AQ13591 1074 aa18.64■□□□□ 0.57
VIM-201ENST00000224237 TPSAB1Q15661 275 aa18.64■□□□□ 0.57
VIM-201ENST00000224237 FAXCQ5TGI0 409 aa18.64■□□□□ 0.57
VIM-201ENST00000224237 LRRC31Q6UY01 552 aa18.64■□□□□ 0.57
VIM-201ENST00000224237 RTL3Q8N8U3 475 aaKnown RBP18.64■□□□□ 0.57
VIM-201ENST00000224237 UHMK1Q8TAS1 419 aaKnown RBP18.64■□□□□ 0.57
VIM-201ENST00000224237 ROPN1BQ9BZX4 212 aaPredicted RBP18.64■□□□□ 0.57
VIM-201ENST00000224237 ROPN1Q9HAT0 212 aaPredicted RBP18.64■□□□□ 0.57
VIM-201ENST00000224237 SEPT10Q9P0V9 454 aa18.64■□□□□ 0.57
VIM-201ENST00000224237 NR2E3Q9Y5X4 410 aa18.64■□□□□ 0.57
VIM-201ENST00000224237 WASH4PA8MWX3 477 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 CNPP09543 421 aaKnown RBP18.63■□□□□ 0.57
VIM-201ENST00000224237 WASHC5Q12768 1159 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 AUHQ13825 339 aaKnown RBP18.63■□□□□ 0.57
VIM-201ENST00000224237 FASTKD3Q14CZ7 662 aaKnown RBP18.63■□□□□ 0.57
VIM-201ENST00000224237 FNBP1LQ5T0N5 605 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 AGBL2Q5U5Z8 902 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 KCTD16Q68DU8 428 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 C14orf80Q86SX3 495 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 FAM76AQ8TAV0 307 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 PSMG2Q969U7 264 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 ALG13Q9NP73 1137 aaKnown RBP18.63■□□□□ 0.57
VIM-201ENST00000224237 VANGL2Q9ULK5 521 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 CEP290O15078 2479 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.63■□□□□ 0.57
VIM-201ENST00000224237 E7EVH7 732 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 ARHGEF15O94989 841 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 HMBSP08397 361 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 SPATA31D3P0C874 917 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 MYOGP15173 224 aa18.63■□□□□ 0.57
VIM-201ENST00000224237 CBLBQ13191 982 aa18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms