RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SYPP08247 313 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 SLC2A3P11169 496 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 CEACAM1P13688 526 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 ANP32AP39687 249 aaKnown RBP19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 TPMTP51580 245 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 COPAP53621 1224 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 VWA3BQ502W6 1294 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 MS4A13Q5J8X5 152 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 EFHC1Q5JVL4 640 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 SYPL2Q5VXT5 272 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 NADSYN1Q6IA69 706 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 TAC4Q86UU9 113 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 MFN1Q8IWA4 741 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 TTC17Q96AE7 1141 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 TOE1Q96GM8 510 aaKnown RBP19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 PPP1R13BQ96KQ4 1090 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 BTN2A3PQ96KV6 586 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 PCED1AQ9H1Q7 454 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 NDST4Q9H3R1 872 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 CAPN10Q9HC96 672 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 ACP6Q9NPH0 428 aa19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.78■□□□□ 0.76
CCDC28A-203ENST00000617445 UPK3BL1B0FP48 263 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 UPK3BL2E5RIL1 263 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 TRUB2O95900 331 aaKnown RBP19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 IGLV3-25P01717 112 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 ASLP04424 464 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 KRT9P35527 623 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 NOVA1P51513 510 aaKnown RBP19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 SGSHP51688 502 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 CDK17Q00537 523 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 ZBTB16Q05516 673 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 PTPRNQ16849 979 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 DPCR1Q3MIW9 517 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 RGL4Q8IZJ4 473 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 ATP6V0D2Q8N8Y2 350 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 KDM1BQ8NB78 822 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 DNASE2BQ8WZ79 361 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 TUBGCP2Q9BSJ2 902 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 SIX2Q9NPC8 291 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 TJP2Q9UDY2 1190 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 DNAJC12Q9UKB3 198 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 CEP83Q9Y592 693 aa19.77■□□□□ 0.76
CCDC28A-203ENST00000617445 ATXN2Q99700 1313 aaKnown RBP19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 HSF2BPO75031 334 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 PMLP29590 882 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 CD70P32970 193 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 SHC2P98077 582 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 EIF4EBP2Q13542 120 aaPredicted RBP19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 CDH18Q13634 790 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 UAP1L1Q3KQV9 507 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 SH3PXD2AQ5TCZ1 1133 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 PSAPL1Q6NUJ1 521 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 WDTC1Q8N5D0 677 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 ADAM32Q8TC27 787 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 CYB5D2Q8WUJ1 264 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 LMLNQ96KR4 655 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 SLC2A13Q96QE2 648 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 NUCKS1Q9H1E3 243 aaKnown RBP19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 CD93Q9NPY3 652 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 TMEM51Q9NW97 253 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 STIM2Q9P246 746 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 ANGPTL2Q9UKU9 493 aa19.76■□□□□ 0.75
CCDC28A-203ENST00000617445 KCNJ18B7U540 433 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 FOXN3O00409 490 aaPredicted RBP19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 ARHGAP33O14559 1287 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 MOCS3O95396 460 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 HLA-EP13747 358 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 MAPK8P45983 427 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 ST8SIA6P61647 398 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 RPS24P62847 133 aaKnown RBP19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 APBA1Q02410 837 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 DCAF6Q58WW2 860 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 ZC3H12AQ5D1E8 599 aaKnown RBP19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 C11orf57Q6ZUT1 292 aaPredicted RBP19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 ZDHHC17Q8IUH5 632 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 FAM71AQ8IYT1 594 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 HDDC3Q8N4P3 179 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 WFDC5Q8TCV5 224 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 PRICKLE1Q96MT3 831 aaPredicted RBP19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 CPXM1Q96SM3 734 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 GPR174Q9BXC1 333 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 ZDHHC5Q9C0B5 715 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 SLC32A1Q9H598 525 aa19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 KIAA1522Q9P206 1035 aaPredicted RBP19.75■□□□□ 0.75
CCDC28A-203ENST00000617445 ADAMTS9Q9P2N4 1935 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 CACNA1BQ00975 2339 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 METTL12A8MUP2 240 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 MEI4A8MW99 385 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 KCNU1A8MYU2 1149 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 OPHN1O60890 802 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 LUC7L3O95232 432 aaKnown RBP19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 MOCS2O96007 188 aaPredicted RBP19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 ABCB4P21439 1286 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 EEF1GP26641 437 aaKnown RBP19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 CCR1P32246 355 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 CLCN1P35523 988 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 OXCT1P55809 520 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 SFSWAPQ12872 951 aaKnown RBP19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 SLC12A1Q13621 1099 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms