RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 PDK1Q15118 436 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 BZW1Q7L1Q6 419 aaKnown RBP14.2□□□□□ -0.14
PTPRF-202ENST00000372405 C14orf80Q86SX3 495 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 DDX53Q86TM3 631 aaKnown RBP14.2□□□□□ -0.14
PTPRF-202ENST00000372405 YME1L1Q96TA2 773 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 CCSER2Q9H7U1 834 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 TLR8Q9NR97 1041 aaKnown RBP14.2□□□□□ -0.14
PTPRF-202ENST00000372405 COMMD8Q9NX08 183 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 PLXNA4Q9HCM2 1894 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 GOLGA6L10A6NI86 522 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 HMGB1P1B2RPK0 211 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-202ENST00000372405 MOCS2O96007 188 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-202ENST00000372405 ACTN2P35609 894 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 PIK3R6Q5UE93 754 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 CENPUQ71F23 418 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 ZBED8Q8IZ13 594 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 AGGF1Q8N302 714 aaeCLIP14.2□□□□□ -0.14
PTPRF-202ENST00000372405 FAM76AQ8TAV0 307 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 CEP41Q9BYV8 373 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 PHACTR1Q9C0D0 580 aa14.2□□□□□ -0.14
PTPRF-202ENST00000372405 CXXC1Q9P0U4 656 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-202ENST00000372405 MAGED2Q9UNF1 606 aaPredicted RBP14.2□□□□□ -0.14
PTPRF-202ENST00000372405 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.2□□□□□ -0.14
PTPRF-202ENST00000372405 NYNRINQ9P2P1 1898 aaKnown RBP14.19□□□□□ -0.14
PTPRF-202ENST00000372405 A0A0A0MRY4 1105 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 SMIM23A6NLE4 172 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 SMAPO00193 183 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 RNF103O00237 685 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 HMGA1P17096 107 aaKnown RBP14.19□□□□□ -0.14
PTPRF-202ENST00000372405 SLCO1A2P46721 670 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 TUFMP49411 452 aaKnown RBP14.19□□□□□ -0.14
PTPRF-202ENST00000372405 PSEN1P49768 467 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 ARL4CP56559 192 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 TBX4P57082 545 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 GALNT2Q10471 571 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 DNAJC21Q5F1R6 531 aaKnown RBP14.19□□□□□ -0.14
PTPRF-202ENST00000372405 ANKRD20A2Q5SQ80 823 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 ANKRD20A1Q5TYW2 823 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 AGBL2Q5U5Z8 902 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 ANKRD20A3Q5VUR7 823 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 MIB1Q86YT6 1006 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 ANKMY2Q8IV38 441 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 VPS52Q8N1B4 723 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 CCNYQ8ND76 341 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 DEPDC1BQ8WUY9 529 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 DPF3Q92784 378 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 BADQ92934 168 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 TLCD1Q96CP7 247 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 SPATA13Q96N96 652 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 NDFIP2Q9NV92 336 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 ZMYND8Q9ULU4 1186 aaPredicted RBP14.19□□□□□ -0.14
PTPRF-202ENST00000372405 RAD54BQ9Y620 910 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 CLUHO75153 1309 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 ANAPC1Q9H1A4 1944 aa14.19□□□□□ -0.14
PTPRF-202ENST00000372405 TLDC2A0PJX2 215 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 ZBBXA8MT70 800 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 PPP1R12AO14974 1030 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 AVILO75366 819 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 GJB5O95377 273 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 IGLV3-27P01718 113 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 DNAJB2P25686 324 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 MLLT6P55198 1093 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 GPX6P59796 221 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 HTRA4P83105 476 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 NRG1Q02297 640 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 PPIDQ08752 370 aaKnown RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 LONRF1Q17RB8 773 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 C10orf120Q5SQS8 335 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 RWDD4Q6NW29 188 aaKnown RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 CEP128Q6ZU80 1094 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 ZNF534Q76KX8 674 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 IGDCC3Q8IVU1 814 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 ARHGAP12Q8IWW6 846 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 ZNF683Q8IZ20 524 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 PGM2Q96G03 612 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 CELF6Q96J87 481 aaKnown RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 SERPINB12Q96P63 405 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 UBE2OQ9C0C9 1292 aaKnown RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 MARCH2Q9P0N8 246 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 BCCIPQ9P287 314 aaKnown RBP eCLIP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 NOVA2Q9UNW9 492 aaKnown RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 E9PAM4 449 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 KCNK1O00180 336 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 RASGRF2O14827 1237 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 TLR5O60602 858 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 LILRB3O75022 631 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 APRTP07741 180 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 ABHD2P08910 425 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 CAPN2P17655 700 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 GARSP41250 739 aaKnown RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 IRAK1P51617 712 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 AUHQ13825 339 aaKnown RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 RAB33AQ14088 237 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 TRIP4Q15650 581 aaPredicted RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 TNFAIP8L3Q5GJ75 292 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 TPGS2Q68CL5 300 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 CAND1Q86VP6 1230 aaKnown RBP14.18□□□□□ -0.14
PTPRF-202ENST00000372405 ZNF567Q8N184 647 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 EXOC4Q96A65 974 aa14.18□□□□□ -0.14
PTPRF-202ENST00000372405 HDAC11Q96DB2 347 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 104.9 ms