RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 C5orf60A6NFR6 353 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 NCAM2O15394 837 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 MAGEA11P43364 429 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 YWHAGP61981 247 aaKnown RBP eCLIP17.39■□□□□ 0.37
LDLR-206ENST00000557958 SMARCB1Q12824 385 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 NR1H3Q13133 447 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 DPYSQ14117 519 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 KCNJ11Q14654 390 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 PAFAH1B3Q15102 231 aaKnown RBP17.39■□□□□ 0.37
LDLR-206ENST00000557958 TMEM240Q5SV17 173 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 ANKRD22Q5VYY1 191 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 ARHGEF18Q6ZSZ5 1173 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 SCN4BQ8IWT1 228 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 BCL7CQ8WUZ0 217 aaPredicted RBP17.39■□□□□ 0.37
LDLR-206ENST00000557958 ZNF689Q96CS4 500 aaPredicted RBP17.39■□□□□ 0.37
LDLR-206ENST00000557958 C8orf48Q96LL4 319 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 LGALS13Q9UHV8 139 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 SLC12A6Q9UHW9 1150 aa17.39■□□□□ 0.37
LDLR-206ENST00000557958 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.39■□□□□ 0.37
LDLR-206ENST00000557958 H7C4K7 107 aa17.38■□□□□ 0.37
LDLR-206ENST00000557958 SERPINB6P35237 376 aa17.38■□□□□ 0.37
LDLR-206ENST00000557958 MAGEA6P43360 314 aa17.38■□□□□ 0.37
LDLR-206ENST00000557958 TNFAIP8L3Q5GJ75 292 aa17.38■□□□□ 0.37
LDLR-206ENST00000557958 DQX1Q8TE96 717 aaKnown RBP17.38■□□□□ 0.37
LDLR-206ENST00000557958 HTR3CQ8WXA8 447 aa17.38■□□□□ 0.37
LDLR-206ENST00000557958 BRD8Q9H0E9 1235 aa17.38■□□□□ 0.37
LDLR-206ENST00000557958 ETNK2Q9NVF9 386 aa17.38■□□□□ 0.37
LDLR-206ENST00000557958 MRPL42Q9Y6G3 142 aaKnown RBP17.38■□□□□ 0.37
LDLR-206ENST00000557958 TNFRSF10BO14763 440 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 SPAG6O75602 509 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 TMEM63AO94886 807 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 MMP13P45452 471 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 GUCY1A3Q02108 690 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 SLC10A2Q12908 348 aaPredicted RBP17.37■□□□□ 0.37
LDLR-206ENST00000557958 SEMA3BQ13214 749 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 CCDC38Q502W7 563 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 BRMS1LQ5PSV4 323 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 PSRC1Q6PGN9 363 aaPredicted RBP17.37■□□□□ 0.37
LDLR-206ENST00000557958 TAC4Q86UU9 113 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 TAB3Q8N5C8 712 aaPredicted RBP17.37■□□□□ 0.37
LDLR-206ENST00000557958 ZNF558Q96NG5 402 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 LRRC4CQ9HCJ2 640 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 SLC4A7Q9Y6M7 1214 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 C2CD2LO14523 706 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 MFSD11O43934 449 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 MAP3K6O95382 1288 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 FGFR3P22607 806 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 LSP1P33241 339 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 HTR7P34969 479 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 FDFT1P37268 417 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 SARNPP82979 210 aaKnown RBP17.37■□□□□ 0.37
LDLR-206ENST00000557958 FASTKD3Q14CZ7 662 aaKnown RBP17.37■□□□□ 0.37
LDLR-206ENST00000557958 BBS9Q3SYG4 887 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 B4GALNT4Q76KP1 1039 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 TDRPQ86YL5 185 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 PALM2Q8IXS6 379 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 NUP93Q8N1F7 819 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 SCAMP5Q8TAC9 235 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 SELENOSQ9BQE4 189 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 MAGEB5Q9BZ81 275 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 TKTL2Q9H0I9 626 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 SMOC2Q9H3U7 446 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 FETUBQ9UGM5 382 aa17.37■□□□□ 0.37
LDLR-206ENST00000557958 PATJQ8NI35 1801 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 A0A0A0MRY4 1105 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 DCLK1O15075 740 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 OPHN1O60890 802 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 MX2P20592 715 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 GLUD2P49448 558 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 IFI35P80217 286 aaPredicted RBP17.36■□□□□ 0.37
LDLR-206ENST00000557958 IFRD2Q12894 506 aaPredicted RBP17.36■□□□□ 0.37
LDLR-206ENST00000557958 CBLBQ13191 982 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 MRPL58Q14197 206 aaKnown RBP17.36■□□□□ 0.37
LDLR-206ENST00000557958 KLHL38Q2WGJ6 581 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 FNBP1LQ5T0N5 605 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 KIAA1841Q6NSI8 718 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 MON1AQ86VX9 555 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 MCUQ8NE86 351 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 CCDC110Q8TBZ0 833 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 ARHGEF2Q92974 986 aaKnown RBP17.36■□□□□ 0.37
LDLR-206ENST00000557958 IGSF21Q96ID5 467 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 SPATA13Q96N96 652 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 PGLYRP2Q96PD5 576 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 OR12D3Q9UGF7 316 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 SLC24A2Q9UI40 661 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 SCML2Q9UQR0 700 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 FNDC1Q4ZHG4 1894 aaPredicted RBP17.36■□□□□ 0.37
LDLR-206ENST00000557958 ALPK3Q96L96 1907 aa17.36■□□□□ 0.37
LDLR-206ENST00000557958 COL4A4P53420 1690 aaPredicted RBP17.36■□□□□ 0.37
LDLR-206ENST00000557958 IRAK2O43187 625 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 MTSS1O43312 755 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 GJB5O95377 273 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 IGLV3-25P01717 112 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 APRTP07741 180 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 CPB1P15086 417 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 TPSB2P20231 275 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 CCR1P32246 355 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 CDK16Q00536 496 aa17.35■□□□□ 0.37
LDLR-206ENST00000557958 PRKD1Q15139 912 aaPredicted RBP17.35■□□□□ 0.37
LDLR-206ENST00000557958 RASA2Q15283 850 aa17.35■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms