RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 EIF2S3P41091 472 aaKnown RBP17.67■□□□□ 0.42
VPS29-204ENST00000548259 YWHAGP61981 247 aaKnown RBP eCLIP17.67■□□□□ 0.42
VPS29-204ENST00000548259 RPS14P62263 151 aaKnown RBP17.67■□□□□ 0.42
VPS29-204ENST00000548259 DLG4P78352 724 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 IL9RQ01113 521 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 CEP135Q66GS9 1140 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 TMEM215Q68D42 235 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 KIAA0895LQ68EN5 471 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 USP30Q70CQ3 517 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 CHST9Q7L1S5 443 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 RNF139Q8WU17 664 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 CYB5D2Q8WUJ1 264 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 TMA16Q96EY4 203 aaKnown RBP17.67■□□□□ 0.42
VPS29-204ENST00000548259 P2RY11Q96G91 374 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 CNDP2Q96KP4 475 aaKnown RBP17.67■□□□□ 0.42
VPS29-204ENST00000548259 HEXIM2Q96MH2 286 aaKnown RBP17.67■□□□□ 0.42
VPS29-204ENST00000548259 TWNKQ96RR1 684 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 ARID3AQ99856 593 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 NRSN2Q9GZP1 204 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 NIF3L1Q9GZT8 377 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 EXOC1Q9NV70 894 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 DMAC2Q9NW81 257 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 FAM13BQ9NYF5 915 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 PTPRBP23467 1997 aa17.67■□□□□ 0.42
VPS29-204ENST00000548259 LRRC72A6NJI9 287 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 PDXKO00764 312 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 LATS1O95835 1130 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 NR3C1P04150 777 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 PRB1P04280 392 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 SLFN14P0C7P3 912 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 POLR2EP19388 210 aaKnown RBP17.66■□□□□ 0.42
VPS29-204ENST00000548259 HOXD9P28356 352 aaPredicted RBP17.66■□□□□ 0.42
VPS29-204ENST00000548259 ARRB1P49407 418 aaPredicted RBP17.66■□□□□ 0.42
VPS29-204ENST00000548259 ST8SIA6P61647 398 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 SLC45A4Q5BKX6 768 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 PPP1R26Q5T8A7 1209 aaPredicted RBP17.66■□□□□ 0.42
VPS29-204ENST00000548259 LAYNQ6UX15 382 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 CEP57L1Q8IYX8 460 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 FCRL3Q96P31 734 aaPredicted RBP17.66■□□□□ 0.42
VPS29-204ENST00000548259 PRORYQ9H606 182 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 PRSS16Q9NQE7 514 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 GDF3Q9NR23 364 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 ABCB8Q9NUT2 735 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 GGA2Q9UJY4 613 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 TPX2Q9ULW0 747 aaKnown RBP17.66■□□□□ 0.42
VPS29-204ENST00000548259 CLEC4EQ9ULY5 219 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 HBS1LQ9Y450 684 aaKnown RBP17.66■□□□□ 0.42
VPS29-204ENST00000548259 SLCO1B1Q9Y6L6 691 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 CABIN1Q9Y6J0 2220 aa17.66■□□□□ 0.42
VPS29-204ENST00000548259 KALRNO60229 2985 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 KNL1Q8NG31 2342 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.65■□□□□ 0.42
VPS29-204ENST00000548259 FAM47DPA6NHR8 397 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 CALUO43852 315 aaPredicted RBP17.65■□□□□ 0.42
VPS29-204ENST00000548259 YEATS4O95619 227 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 PABPC1P11940 636 aaKnown RBP17.65■□□□□ 0.42
VPS29-204ENST00000548259 ITPKBP27987 946 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 HLA-FP30511 346 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 AFMP43652 599 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 VAMP7P51809 220 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 TRIP4Q15650 581 aaPredicted RBP17.65■□□□□ 0.42
VPS29-204ENST00000548259 ADGRF1Q5T601 910 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 GPR155Q7Z3F1 870 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 OXR1Q8N573 874 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 ZNF366Q8N895 744 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 AASDHPPTQ9NRN7 309 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 MTMR6Q9Y217 621 aa17.65■□□□□ 0.42
VPS29-204ENST00000548259 TEX51A0A1B0GUA7 166 aa17.64■□□□□ 0.41
VPS29-204ENST00000548259 A0A1W2PPC4 97 aa17.64■□□□□ 0.41
VPS29-204ENST00000548259 ZBED1O96006 694 aa17.64■□□□□ 0.41
VPS29-204ENST00000548259 KRT13P13646 458 aa17.64■□□□□ 0.41
VPS29-204ENST00000548259 TARDBPQ13148 414 aaKnown RBP eCLIP17.64■□□□□ 0.41
VPS29-204ENST00000548259 ILKQ13418 452 aa17.64■□□□□ 0.41
VPS29-204ENST00000548259 RTP5Q14D33 572 aa17.64■□□□□ 0.41
VPS29-204ENST00000548259 KMT5BQ4FZB7 885 aa17.64■□□□□ 0.41
VPS29-204ENST00000548259 MBLAC2Q68D91 279 aa17.64■□□□□ 0.41
VPS29-204ENST00000548259 INTS8Q75QN2 995 aaKnown RBP17.64■□□□□ 0.41
VPS29-204ENST00000548259 GATAD2AQ86YP4 633 aa17.64■□□□□ 0.41
VPS29-204ENST00000548259 CCDC117Q8IWD4 279 aaPredicted RBP17.64■□□□□ 0.41
VPS29-204ENST00000548259 DDX51Q8N8A6 666 aaKnown RBP eCLIP17.64■□□□□ 0.41
VPS29-204ENST00000548259 FAXDC2Q96IV6 333 aa17.64■□□□□ 0.41
VPS29-204ENST00000548259 IPO9Q96P70 1041 aaKnown RBP17.64■□□□□ 0.41
VPS29-204ENST00000548259 IRX2Q9BZI1 471 aaPredicted RBP17.64■□□□□ 0.41
VPS29-204ENST00000548259 LRRC4Q9HBW1 653 aa17.64■□□□□ 0.41
VPS29-204ENST00000548259 FBXL12Q9NXK8 326 aa17.64■□□□□ 0.41
VPS29-204ENST00000548259 TYW5A2RUC4 315 aaKnown RBP17.63■□□□□ 0.41
VPS29-204ENST00000548259 MAPK13O15264 365 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 CD38P28907 300 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 CASP1P29466 404 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 ACTN2P35609 894 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 TKTL1P51854 596 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 CUL4BQ13620 913 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 ZNF394Q53GI3 561 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 MPP7Q5T2T1 576 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 HES3Q5TGS1 186 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 SHC4Q6S5L8 630 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 ADIPOR2Q86V24 386 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 PIGZQ86VD9 579 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 FMNL3Q8IVF7 1028 aa17.63■□□□□ 0.41
VPS29-204ENST00000548259 SNIP1Q8TAD8 396 aaKnown RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms