RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CCHCR1Q8TD31 782 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 RXFP2Q8WXD0 754 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 HIC2Q96JB3 615 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 TGS1Q96RS0 853 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 PITPNM3Q9BZ71 974 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 MRPL47Q9HD33 250 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 ZNF232Q9UNY5 417 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 USP15Q9Y4E8 981 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 MICAL3Q7RTP6 2002 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 CFAP69A5D8W1 941 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 POC1B-GALNT4F8VUJ3 575 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 GRM6O15303 877 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 BAIAP3O94812 1187 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 TCF4P15884 667 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 DESP17661 470 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 SDC4P31431 198 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 ALDH1A3P47895 512 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 USP46P62068 366 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 POU5F1Q01860 360 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 UBAP2Q5T6F2 1119 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 BTBD8Q5XKL5 378 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 ZNF354CQ86Y25 554 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 SLC25A41Q8N5S1 370 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 TPCN2Q8NHX9 752 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 RNF139Q8WU17 664 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 LRRN4Q8WUT4 740 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 KRT35Q92764 455 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 FBXO32Q969P5 355 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 ACBD6Q9BR61 282 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 YIPF2Q9BWQ6 316 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 DUSP16Q9BY84 665 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 SEMA4AQ9H3S1 761 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 VRTNQ9H8Y1 702 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 DMAP1Q9NPF5 467 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 ASIC3Q9UHC3 531 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 A0A0G2JND7 137 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 TMEM120BA0PK00 339 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 WDR27A2RRH5 827 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 NVLO15381 856 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 CCL16O15467 120 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 PAPSS1O43252 624 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 TBX18O95935 607 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 TFE3P19532 575 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 MMP8P22894 467 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 PTDSS1P48651 473 aaKnown RBP8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 SULT1E1P49888 294 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 PITX1P78337 314 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 PLCB3Q01970 1234 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 CENPCQ03188 943 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 OVGP1Q12889 678 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 MAMLD1Q13495 774 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 ACAP1Q15027 740 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 UBE2Q1Q7Z7E8 422 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 MFN1Q8IWA4 741 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 DEFB106AQ8N104 65 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 C12orf76Q8N812 135 aaPredicted RBP8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 MAB21L3Q8N8X9 362 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 FEZF2Q8TBJ5 459 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 FBXO25Q8TCJ0 367 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 RMDN2Q96LZ7 410 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 CRISPLD1Q9H336 500 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 TMPRSS4Q9NRS4 437 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 HOMER3Q9NSC5 361 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 PCMTD2Q9NV79 361 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 CLIC5Q9NZA1 410 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 SFMBT1Q9UHJ3 866 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 MSRAQ9UJ68 235 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 NAALADL1Q9UQQ1 740 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 DOCK6Q96HP0 2047 aa8.97□□□□□ -0.97
LIMCH1-209ENST00000509277 ATP8B3O60423 1300 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 DYTNA2CJ06 578 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 LINC01553A4QN01 128 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 YJEFN3A6XGL0 299 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 E7ENQ6 273 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 H7C4K7 107 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 PGRMC1O00264 195 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 TEX28O15482 410 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 MSI1O43347 362 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 STAMBPO95630 424 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 GZMAP12544 262 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 MYL4P12829 197 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 ATP6V1B1P15313 513 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 RASSF2P50749 326 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 SLC5A3P53794 718 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 GPM6BQ13491 265 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 ZRSR2Q15696 482 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 CLUL1Q15846 466 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 NFE2Q16621 373 aaPredicted RBP8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 PAQR9Q6ZVX9 377 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 RHOT2Q8IXI1 618 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 SLC39A11Q8N1S5 342 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 ARHGAP18Q8N392 663 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 DRAXINQ8NBI3 349 aaPredicted RBP8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 GSDMBQ8TAX9 411 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 SLC22A17Q8WUG5 538 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 CAVIN3Q969G5 261 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 VN1R3Q9BXE9 311 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 KDM4CQ9H3R0 1056 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 DNAAF2Q9NVR5 837 aaKnown RBP8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 DAAM1Q9Y4D1 1078 aa8.96□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms