RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 USP3Q9Y6I4 520 aa17.43■□□□□ 0.38
LDLR-206ENST00000557958 EEF2KO00418 725 aaKnown RBP17.42■□□□□ 0.38
LDLR-206ENST00000557958 ALOX15BO15296 676 aa17.42■□□□□ 0.38
LDLR-206ENST00000557958 STK10O94804 968 aaKnown RBP17.42■□□□□ 0.38
LDLR-206ENST00000557958 FYNP06241 537 aa17.42■□□□□ 0.38
LDLR-206ENST00000557958 PHBP35232 272 aa17.42■□□□□ 0.38
LDLR-206ENST00000557958 ADRA1BP35368 520 aa17.42■□□□□ 0.38
LDLR-206ENST00000557958 ELAVL2Q12926 359 aaKnown RBP17.42■□□□□ 0.38
LDLR-206ENST00000557958 PDIA2Q13087 525 aaKnown RBP17.42■□□□□ 0.38
LDLR-206ENST00000557958 SLC39A12Q504Y0 691 aa17.42■□□□□ 0.38
LDLR-206ENST00000557958 COL13A1Q5TAT6 717 aaPredicted RBP17.42■□□□□ 0.38
LDLR-206ENST00000557958 ZBED8Q8IZ13 594 aa17.42■□□□□ 0.38
LDLR-206ENST00000557958 RIBC1Q8N443 379 aaPredicted RBP17.42■□□□□ 0.38
LDLR-206ENST00000557958 EPS8L3Q8TE67 593 aaKnown RBP17.42■□□□□ 0.38
LDLR-206ENST00000557958 C9orf72Q96LT7 481 aa17.42■□□□□ 0.38
LDLR-206ENST00000557958 PWWP2AQ96N64 755 aa17.42■□□□□ 0.38
LDLR-206ENST00000557958 QKIQ96PU8 341 aaKnown RBP eCLIP17.42■□□□□ 0.38
LDLR-206ENST00000557958 ZBED2Q9BTP6 218 aa17.42■□□□□ 0.38
LDLR-206ENST00000557958 GPR62Q9BZJ7 368 aa17.42■□□□□ 0.38
LDLR-206ENST00000557958 USP29Q9HBJ7 922 aa17.42■□□□□ 0.38
LDLR-206ENST00000557958 ARHGEF4Q9NR80 690 aa17.42■□□□□ 0.38
LDLR-206ENST00000557958 XPO7Q9UIA9 1087 aaKnown RBP17.42■□□□□ 0.38
LDLR-206ENST00000557958 FBXW11Q9UKB1 542 aa17.42■□□□□ 0.38
LDLR-206ENST00000557958 CDH16O75309 829 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 BAIAP3O94812 1187 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 ATP2A2P16615 1042 aaKnown RBP17.41■□□□□ 0.38
LDLR-206ENST00000557958 RBL1P28749 1068 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 PITX1P78337 314 aaPredicted RBP17.41■□□□□ 0.38
LDLR-206ENST00000557958 BSPRYQ5W0U4 402 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 NCBP2-AS2Q69YL0 99 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 HEATR6Q6AI08 1181 aaKnown RBP17.41■□□□□ 0.38
LDLR-206ENST00000557958 VSTM1Q6UX27 236 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 TMEM173Q86WV6 379 aaPredicted RBP17.41■□□□□ 0.38
LDLR-206ENST00000557958 TFB1MQ8WVM0 346 aaKnown RBP17.41■□□□□ 0.38
LDLR-206ENST00000557958 TMEM209Q96SK2 561 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 RAD54BQ9Y620 910 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 MICAL3Q7RTP6 2002 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 OR6C75A6NL08 312 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 TRIM66O15016 1216 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 CREB3O43889 395 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 TSHRP16473 764 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 AMPD1P23109 780 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 MDH1P40925 334 aaKnown RBP17.41■□□□□ 0.38
LDLR-206ENST00000557958 SLCO1A2P46721 670 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 HCAR3P49019 387 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 IRAK1P51617 712 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 GBE1Q04446 702 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 SLC20A2Q08357 652 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 AUHQ13825 339 aaKnown RBP17.41■□□□□ 0.38
LDLR-206ENST00000557958 ZNF280DQ6N043 979 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 RFX8Q6ZV50 586 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 PYROXD2Q8N2H3 581 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 ATP11CQ8NB49 1132 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 LBHD1Q9BQE6 289 aaPredicted RBP17.41■□□□□ 0.38
LDLR-206ENST00000557958 TMEM175Q9BSA9 504 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 WDCPQ9H6R7 721 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 CWH43Q9H720 699 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 WDR6Q9NNW5 1121 aaKnown RBP17.41■□□□□ 0.38
LDLR-206ENST00000557958 ABCC13Q9NSE7 274 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 MARCH5Q9NX47 278 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 DTLQ9NZJ0 730 aa17.41■□□□□ 0.38
LDLR-206ENST00000557958 CXXC1Q9P0U4 656 aaPredicted RBP17.41■□□□□ 0.38
LDLR-206ENST00000557958 SRRM3A6NNA2 597 aaPredicted RBP17.4■□□□□ 0.38
LDLR-206ENST00000557958 PPP1R12AO14974 1030 aaPredicted RBP17.4■□□□□ 0.38
LDLR-206ENST00000557958 OR4Q2P0C623 313 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 RABGGTBP53611 331 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 SLC5A3P53794 718 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 ARPP19P56211 112 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 PDK1Q15118 436 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 LONRF1Q17RB8 773 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 FUT10Q6P4F1 479 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 KCNT2Q6UVM3 1135 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 BHLHA9Q7RTU4 235 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 VPS52Q8N1B4 723 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 PYROXD1Q8WU10 500 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 EDEM1Q92611 657 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 ABHD8Q96I13 439 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 EPAS1Q99814 870 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 OXCT2Q9BYC2 517 aaPredicted RBP17.4■□□□□ 0.38
LDLR-206ENST00000557958 VPS37BQ9H9H4 285 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 RAB6BQ9NRW1 208 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 ABI2Q9NYB9 513 aaPredicted RBP17.4■□□□□ 0.38
LDLR-206ENST00000557958 PCDHB5Q9Y5E4 795 aa17.4■□□□□ 0.38
LDLR-206ENST00000557958 EXOC1LA0A1B0GW35 172 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 E7ESA3 106 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 E7EVH7 732 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 GOLGA8MH3BSY2 632 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 GCATO75600 419 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 CXCR3P49682 368 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 TPI1P60174 286 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 CTXN3Q4LDR2 81 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 VARS2Q5ST30 1063 aaKnown RBP17.39■□□□□ 0.38
LDLR-206ENST00000557958 UBAP2Q5T6F2 1119 aaKnown RBP17.39■□□□□ 0.38
LDLR-206ENST00000557958 BTBD8Q5XKL5 378 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 TAS1R1Q7RTX1 841 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 ARHGAP18Q8N392 663 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 ADAM32Q8TC27 787 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 RNF34Q969K3 372 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 OLFM3Q96PB7 478 aa17.39■□□□□ 0.38
LDLR-206ENST00000557958 FBXO44Q9H4M3 255 aa17.39■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 123.2 ms