RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-218ENST00000546298 GREB1Q4ZG55 1949 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 ANAPC1Q9H1A4 1944 aa9.76□□□□□ -0.85
YBX3-218ENST00000546298 IGHV1OR15-9A0A0B4J2B8 117 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 LNP1A1A4G5 178 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 TYW5A2RUC4 315 aaKnown RBP9.75□□□□□ -0.85
YBX3-218ENST00000546298 WASH3PC4AMC7 463 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 IRAK2O43187 625 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 MSI1O43347 362 aaKnown RBP9.75□□□□□ -0.85
YBX3-218ENST00000546298 TSPAN3O60637 253 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 LETM1O95202 739 aaPredicted RBP9.75□□□□□ -0.85
YBX3-218ENST00000546298 KCNK5O95279 499 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 NCAM1P13591 858 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 CD6P30203 668 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 OXTRP30559 389 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 IL12RB1P42701 662 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 GPD2P43304 727 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 RPL34P49207 117 aaKnown RBP9.75□□□□□ -0.85
YBX3-218ENST00000546298 ATXN3P54252 364 aaPredicted RBP9.75□□□□□ -0.85
YBX3-218ENST00000546298 SNX16P57768 344 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 GFPT1Q06210 699 aaPredicted RBP9.75□□□□□ -0.85
YBX3-218ENST00000546298 NNTQ13423 1086 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 ZNF234Q14588 700 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 TPD52L1Q16890 204 aaPredicted RBP9.75□□□□□ -0.85
YBX3-218ENST00000546298 WDR45BQ5MNZ6 344 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 SYCP2LQ5T4T6 812 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 SLC23A3Q6PIS1 610 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 SERPINA13PQ6UXR4 307 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 GBP6Q6ZN66 633 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 BEND5Q7L4P6 421 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 FAM114A1Q8IWE2 563 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 FRMD1Q8N878 549 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 ZNF606Q8WXB4 792 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 PRCCQ92733 491 aaPredicted RBP9.75□□□□□ -0.85
YBX3-218ENST00000546298 FAM149B1Q96BN6 582 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 KREMEN1Q96MU8 473 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 SERPINB11Q96P15 392 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 MED15Q96RN5 788 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 MIS12Q9H081 205 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 PRDM16Q9HAZ2 1276 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 CD248Q9HCU0 757 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 ITM2CQ9NQX7 267 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 SUSD2Q9UGT4 822 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 PILRBQ9UKJ0 227 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 SLC6A14Q9UN76 642 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 CYP8B1Q9UNU6 501 aa9.75□□□□□ -0.85
YBX3-218ENST00000546298 GTPBP10A4D1E9 387 aaKnown RBP9.74□□□□□ -0.85
YBX3-218ENST00000546298 PATE3B3GLJ2 98 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 PIK3R2O00459 728 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 CAPN9O14815 690 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 THAP12O43422 761 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 ACSL4O60488 711 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 GABBR2O75899 941 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 IGLV3-27P01718 113 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 CFIP05156 583 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 ATP5BP06576 529 aaKnown RBP9.74□□□□□ -0.85
YBX3-218ENST00000546298 EPHX1P07099 455 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 SERPINF2P08697 491 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 ACADMP11310 421 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 PABPC1P11940 636 aaKnown RBP9.74□□□□□ -0.85
YBX3-218ENST00000546298 GNSP15586 552 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 CSRP1P21291 193 aaKnown RBP9.74□□□□□ -0.85
YBX3-218ENST00000546298 ITPKAP23677 461 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 HOXD9P28356 352 aaPredicted RBP9.74□□□□□ -0.85
YBX3-218ENST00000546298 USP8P40818 1118 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 MTIF2P46199 727 aaKnown RBP9.74□□□□□ -0.85
YBX3-218ENST00000546298 NOVA1P51513 510 aaKnown RBP9.74□□□□□ -0.85
YBX3-218ENST00000546298 FUT11Q495W5 492 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 N4BP2L1Q5TBK1 243 aaPredicted RBP9.74□□□□□ -0.85
YBX3-218ENST00000546298 PEAR1Q5VY43 1037 aaPredicted RBP9.74□□□□□ -0.85
YBX3-218ENST00000546298 TRIM65Q6PJ69 517 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 CHST9Q7L1S5 443 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 TMPRSS6Q8IU80 811 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 SCUBE3Q8IX30 993 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 AHI1Q8N157 1196 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.74□□□□□ -0.85
YBX3-218ENST00000546298 HJURPQ8NCD3 748 aaPredicted RBP9.74□□□□□ -0.85
YBX3-218ENST00000546298 DQX1Q8TE96 717 aaKnown RBP9.74□□□□□ -0.85
YBX3-218ENST00000546298 SIPA1Q96FS4 1042 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 P2RY11Q96G91 374 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 ZNF419Q96HQ0 510 aaPredicted RBP9.74□□□□□ -0.85
YBX3-218ENST00000546298 CRACR2AQ9BSW2 395 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 SLC4A5Q9BY07 1137 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 FBRSQ9HAH7 460 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 TMEM74BQ9NUR3 256 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 DACH1Q9UI36 760 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 GGA2Q9UJY4 613 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 CLEC4EQ9ULY5 219 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 TLR6Q9Y2C9 796 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 CACNA1AO00555 2505 aa9.74□□□□□ -0.85
YBX3-218ENST00000546298 CDX4O14627 284 aaPredicted RBP9.73□□□□□ -0.85
YBX3-218ENST00000546298 TBL1XO60907 577 aa9.73□□□□□ -0.85
YBX3-218ENST00000546298 APOEP02649 317 aa9.73□□□□□ -0.85
YBX3-218ENST00000546298 SYPP08247 313 aa9.73□□□□□ -0.85
YBX3-218ENST00000546298 CEACAM1P13688 526 aa9.73□□□□□ -0.85
YBX3-218ENST00000546298 ENGP17813 658 aa9.73□□□□□ -0.85
YBX3-218ENST00000546298 POLR2EP19388 210 aaKnown RBP9.73□□□□□ -0.85
YBX3-218ENST00000546298 SLC9A1P19634 815 aa9.73□□□□□ -0.85
YBX3-218ENST00000546298 ERCC5P28715 1186 aaPredicted RBP9.73□□□□□ -0.85
YBX3-218ENST00000546298 HLA-FP30511 346 aa9.73□□□□□ -0.85
YBX3-218ENST00000546298 GNA15P30679 374 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms