RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 STIP1P31948 543 aaKnown RBP14.27□□□□□ -0.13
PTPRF-202ENST00000372405 NR2C2P49116 596 aa14.27□□□□□ -0.13
PTPRF-202ENST00000372405 DUSP4Q13115 394 aa14.27□□□□□ -0.13
PTPRF-202ENST00000372405 MORF4L2Q15014 288 aa14.27□□□□□ -0.13
PTPRF-202ENST00000372405 USP41Q3LFD5 358 aa14.27□□□□□ -0.13
PTPRF-202ENST00000372405 ARTNQ5T4W7 220 aa14.27□□□□□ -0.13
PTPRF-202ENST00000372405 SLC8B1Q6J4K2 584 aa14.27□□□□□ -0.13
PTPRF-202ENST00000372405 TP53INP2Q8IXH6 220 aa14.27□□□□□ -0.13
PTPRF-202ENST00000372405 TAB3Q8N5C8 712 aaPredicted RBP14.27□□□□□ -0.13
PTPRF-202ENST00000372405 TRIM62Q9BVG3 475 aa14.27□□□□□ -0.13
PTPRF-202ENST00000372405 GMIPQ9P107 970 aa14.27□□□□□ -0.13
PTPRF-202ENST00000372405 TCRBV7S3A2A0A539 114 aa14.26□□□□□ -0.13
PTPRF-202ENST00000372405 EEF2KO00418 725 aaKnown RBP14.26□□□□□ -0.13
PTPRF-202ENST00000372405 KCNN4O15554 427 aa14.26□□□□□ -0.13
PTPRF-202ENST00000372405 HAPLN1P10915 354 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-202ENST00000372405 MGAT5BQ3V5L5 792 aa14.26□□□□□ -0.13
PTPRF-202ENST00000372405 MON1AQ86VX9 555 aa14.26□□□□□ -0.13
PTPRF-202ENST00000372405 SLC39A11Q8N1S5 342 aa14.26□□□□□ -0.13
PTPRF-202ENST00000372405 NAT8LQ8N9F0 302 aa14.26□□□□□ -0.13
PTPRF-202ENST00000372405 SEPT5Q99719 369 aaPredicted RBP14.26□□□□□ -0.13
PTPRF-202ENST00000372405 ARHGEF38Q9NXL2 777 aa14.26□□□□□ -0.13
PTPRF-202ENST00000372405 SHOC2Q9UQ13 582 aa14.26□□□□□ -0.13
PTPRF-202ENST00000372405 NR2E3Q9Y5X4 410 aa14.26□□□□□ -0.13
PTPRF-202ENST00000372405 MRPL42Q9Y6G3 142 aaKnown RBP14.26□□□□□ -0.13
PTPRF-202ENST00000372405 NUP205Q92621 2012 aa14.26□□□□□ -0.13
PTPRF-202ENST00000372405 ATF6P18850 670 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 XRCC4Q13426 336 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 PSMD5Q16401 504 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 ARL13BQ3SXY8 428 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 SLC45A4Q5BKX6 768 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 DENND5BQ6ZUT9 1274 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 TRMT10CQ7L0Y3 403 aaKnown RBP14.25□□□□□ -0.13
PTPRF-202ENST00000372405 C16orf59Q7L2K0 433 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 RELL1Q8IUW5 271 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 UHMK1Q8TAS1 419 aaKnown RBP14.25□□□□□ -0.13
PTPRF-202ENST00000372405 QKIQ96PU8 341 aaKnown RBP eCLIP14.25□□□□□ -0.13
PTPRF-202ENST00000372405 CLSTN3Q9BQT9 956 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 OXCT2Q9BYC2 517 aaPredicted RBP14.25□□□□□ -0.13
PTPRF-202ENST00000372405 FBXO44Q9H4M3 255 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 TMBIM4Q9HC24 238 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 OR12D3Q9UGF7 316 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 NEU3Q9UQ49 428 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 GOLGA8KD6RF30 607 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 C2CD2LO14523 706 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 TMEM63AO94886 807 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 VAV1P15498 845 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 ERCC2P18074 760 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 OR1D2P34982 312 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 HCAR3P49019 387 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 SMARCB1Q12824 385 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 PAFAH1B3Q15102 231 aaKnown RBP14.25□□□□□ -0.13
PTPRF-202ENST00000372405 DENND2CQ68D51 928 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 KCTD16Q68DU8 428 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 PPIL6Q8IXY8 311 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 SH2D3CQ8N5H7 860 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 NPWQ8N729 165 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 SPATA17Q96L03 361 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 RBM15Q96T37 977 aaKnown RBP eCLIP14.25□□□□□ -0.13
PTPRF-202ENST00000372405 LGMNQ99538 433 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 TSPYL1Q9H0U9 437 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 NINJ2Q9NZG7 142 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 BACE2Q9Y5Z0 518 aa14.25□□□□□ -0.13
PTPRF-202ENST00000372405 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-202ENST00000372405 CFAP69A5D8W1 941 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 GOLGA8MH3BSY2 632 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 LRIG2O94898 1065 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 ACSL3O95573 720 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 TTC4O95801 387 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 SOD2P04179 222 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 HSPA1AP0DMV8 641 aaKnown RBP14.24□□□□□ -0.13
PTPRF-202ENST00000372405 HSPA1BP0DMV9 641 aaKnown RBP14.24□□□□□ -0.13
PTPRF-202ENST00000372405 YWHAQP27348 245 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 TPI1P60174 286 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 TAF10Q12962 218 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 BTG3Q14201 252 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-202ENST00000372405 FASTKD3Q14CZ7 662 aaKnown RBP14.24□□□□□ -0.13
PTPRF-202ENST00000372405 KYNUQ16719 465 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 RASIP1Q5U651 963 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 MSANTD2Q6P1R3 559 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 OTOP2Q7RTS6 562 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 UBE2Q1Q7Z7E8 422 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 CDKL3Q8IVW4 592 aaPredicted RBP14.24□□□□□ -0.13
PTPRF-202ENST00000372405 TMEM199Q8N511 208 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 GOLGA6L1Q8N7Z2 621 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 C2orf15Q8WU43 125 aaKnown RBP14.24□□□□□ -0.13
PTPRF-202ENST00000372405 ZNF558Q96NG5 402 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 FOXP3Q9BZS1 431 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 PRDM16Q9HAZ2 1276 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 XPO7Q9UIA9 1087 aaKnown RBP14.24□□□□□ -0.13
PTPRF-202ENST00000372405 ADAM21Q9UKJ8 722 aa14.24□□□□□ -0.13
PTPRF-202ENST00000372405 MYO18AQ92614 2054 aaKnown RBP14.24□□□□□ -0.13
PTPRF-202ENST00000372405 KCNJ11Q14654 390 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 MSS51Q4VC12 460 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 SPOUT1Q5T280 376 aaKnown RBP14.23□□□□□ -0.13
PTPRF-202ENST00000372405 CMTR2Q8IYT2 770 aaKnown RBP14.23□□□□□ -0.13
PTPRF-202ENST00000372405 COLGALT1Q8NBJ5 622 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 CCDC110Q8TBZ0 833 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 RNF34Q969K3 372 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 FBXO32Q969P5 355 aa14.23□□□□□ -0.13
PTPRF-202ENST00000372405 C9orf72Q96LT7 481 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms