RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 TLDC1Q6P9B6 456 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 MMGT1Q8N4V1 131 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 TOP6BLQ8N6T0 577 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 FAM81AQ8TBF8 368 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 MAIP1Q8WWC4 291 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 CCT6BQ92526 530 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 MCUR1Q96AQ8 359 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 IGSF21Q96ID5 467 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 DNAJC1Q96KC8 554 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 SLITRK6Q9H5Y7 841 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 DDX18Q9NVP1 670 aaKnown RBP9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 MARCH5Q9NX47 278 aa9.01□□□□□ -0.97
LIMCH1-209ENST00000509277 MOCS2O96007 188 aaPredicted RBP9□□□□□ -0.97
LIMCH1-209ENST00000509277 KLRC2P26717 231 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 HNRNPH3P31942 346 aaKnown RBP9□□□□□ -0.97
LIMCH1-209ENST00000509277 RFC2P35250 354 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 C15orf59Q2T9L4 293 aaPredicted RBP9□□□□□ -0.97
LIMCH1-209ENST00000509277 DCAF6Q58WW2 860 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 ZBTB46Q86UZ6 589 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 MCOLN2Q8IZK6 566 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 PPFIBP2Q8ND30 876 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 JOSD2Q8TAC2 188 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 MIPOL1Q8TD10 442 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 DNAJC9Q8WXX5 260 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 DDX1Q92499 740 aaKnown RBP9□□□□□ -0.97
LIMCH1-209ENST00000509277 VWCEQ96DN2 955 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 SUSD3Q96L08 255 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 TCF25Q9BQ70 676 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 ULBP1Q9BZM6 244 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 SLC28A3Q9HAS3 691 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 AAASQ9NRG9 546 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 MGRN1O60291 552 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 SPAG7O75391 227 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 STK10O94804 968 aaKnown RBP9□□□□□ -0.97
LIMCH1-209ENST00000509277 CBX6O95503 412 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 CREB1P16220 341 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 DYNLT1P63172 113 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 XRCC4Q13426 336 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 SLC29A2Q14542 456 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 C11orf91Q3C1V1 193 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 KCTD21Q4G0X4 260 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 XKR4Q5GH76 650 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 C1orf53Q5VUE5 145 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 RNF19BQ6ZMZ0 732 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 MIB1Q86YT6 1006 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 SRRM1Q8IYB3 904 aaKnown RBP9□□□□□ -0.97
LIMCH1-209ENST00000509277 CCDC33Q8N5R6 958 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 HSPH1Q92598 858 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 BHMTQ93088 406 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 UROC1Q96N76 676 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 SMC6Q96SB8 1091 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 FAM118BQ9BPY3 351 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 GORASP1Q9BQQ3 440 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 SIP14410 1827 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 PMM2O15305 246 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 ARHGEF15O94989 841 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 MAP3K6O95382 1288 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 PDGFRAP16234 1089 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 CCND1P24385 295 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 BCAT1P54687 386 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 ROR2Q01974 943 aaKnown RBP9□□□□□ -0.97
LIMCH1-209ENST00000509277 DSC1Q08554 894 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 CNGA2Q16280 664 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 INTS6LQ5JSJ4 861 aaKnown RBP9□□□□□ -0.97
LIMCH1-209ENST00000509277 RSPO2Q6UXX9 243 aaPredicted RBP9□□□□□ -0.97
LIMCH1-209ENST00000509277 FAM183BPQ6ZVS7 135 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 TRIM42Q8IWZ5 723 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 COLGALT1Q8NBJ5 622 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 FBXO22Q8NEZ5 403 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 LRRC8CQ8TDW0 803 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 HAUS1Q96CS2 278 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 CFAP57Q96MR6 1250 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 HEMGNQ9BXL5 484 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 OCEL1Q9H607 264 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 ELAC1Q9H777 363 aaKnown RBP9□□□□□ -0.97
LIMCH1-209ENST00000509277 TRPC7Q9HCX4 862 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 MRPL17Q9NRX2 175 aaKnown RBP9□□□□□ -0.97
LIMCH1-209ENST00000509277 GPATCH2LQ9NWQ4 482 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 GDAP2Q9NXN4 497 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 COG5Q9UP83 839 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 A0A0C4DFX4 3053 aa9□□□□□ -0.97
LIMCH1-209ENST00000509277 RNF8O76064 485 aa8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 PAEPP09466 180 aa8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 DRD4P21917 467 aa8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 IGFBP4P22692 258 aa8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 EPHB2P29323 1055 aa8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 RFC1P35251 1148 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 BST2Q10589 180 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 PPP6R3Q5H9R7 873 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 PPP2R2DQ66LE6 453 aa8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 AADACL2Q6P093 401 aa8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 GPRIN1Q7Z2K8 1008 aa8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 RNF168Q8IYW5 571 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 DCP1BQ8IZD4 617 aaKnown RBP8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 WDTC1Q8N5D0 677 aa8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 TMEM174Q8WUU8 243 aa8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 RNF25Q96BH1 459 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 ZNF512Q96ME7 567 aaPredicted RBP8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 RAD9AQ99638 391 aa8.99□□□□□ -0.97
LIMCH1-209ENST00000509277 NKX2-4Q9H2Z4 354 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms