RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 RNF139Q8WU17 664 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 ARL8AQ96BM9 186 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 ZNF689Q96CS4 500 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-202ENST00000372405 PABPC3Q9H361 631 aaKnown RBP14.3□□□□□ -0.12
PTPRF-202ENST00000372405 FAM204AQ9H8W3 233 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 PRDM5Q9NQX1 630 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-202ENST00000372405 OSER1Q9NX31 292 aa14.3□□□□□ -0.12
PTPRF-202ENST00000372405 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.3□□□□□ -0.121e-6■■■□□ 16.4
PTPRF-202ENST00000372405 RCOR3Q9P2K3 495 aaPredicted RBP14.3□□□□□ -0.12
PTPRF-202ENST00000372405 KIAA0355O15063 1070 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 RARGP13631 454 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 ALDH7A1P49419 539 aaKnown RBP14.29□□□□□ -0.12
PTPRF-202ENST00000372405 ROR1Q01973 937 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 CAV1Q03135 178 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 ZNF844Q08AG5 666 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 TTMPQ5BVD1 217 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 SPDYCQ5MJ68 293 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 RNASEH2BQ5TBB1 312 aaKnown RBP14.29□□□□□ -0.12
PTPRF-202ENST00000372405 DARS2Q6PI48 645 aaKnown RBP14.29□□□□□ -0.12
PTPRF-202ENST00000372405 CCDC25Q86WR0 208 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 CCDC33Q8N5R6 958 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 RSAD2Q8WXG1 361 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 IGSF21Q96ID5 467 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 DNAJC17Q9NVM6 304 aaKnown RBP14.29□□□□□ -0.12
PTPRF-202ENST00000372405 SLC27A5Q9Y2P5 690 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 KIAA1671Q9BY89 1806 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 ABHD14A-ACY1A0A1B0GW23 586 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 TRIM66O15016 1216 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 CPB1P15086 417 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 AIF1P55008 147 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 DPYSQ14117 519 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 EFHC2Q5JST6 749 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 FAM117BQ6P1L5 589 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 LRIG3Q6UXM1 1119 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 ANKS3Q6ZW76 656 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 NUP93Q8N1F7 819 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 BBOF1Q8ND07 529 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 IL37Q9NZH6 218 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 DTLQ9NZJ0 730 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 TPX2Q9ULW0 747 aaKnown RBP14.29□□□□□ -0.12
PTPRF-202ENST00000372405 SCML2Q9UQR0 700 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 FARP1Q9Y4F1 1045 aaPredicted RBP14.29□□□□□ -0.12
PTPRF-202ENST00000372405 SNX10Q9Y5X0 201 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 CDY1Q9Y6F8 540 aa14.29□□□□□ -0.12
PTPRF-202ENST00000372405 ALPK3Q96L96 1907 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 A0A1W2PQH9 124 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 H7C0C1 242 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 CREB3O43889 395 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 F9P00740 461 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 SHBGP04278 402 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 ACRP10323 421 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 RPL17P18621 184 aaKnown RBP14.28□□□□□ -0.12
PTPRF-202ENST00000372405 RBL1P28749 1068 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 ARL4AP40617 200 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 ATP5OP48047 213 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 WDR5P61964 334 aaKnown RBP14.28□□□□□ -0.12
PTPRF-202ENST00000372405 SLMAPQ14BN4 828 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 NECAB2Q7Z6G3 386 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 NETO2Q8NC67 525 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 CASP10Q92851 521 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 OLFM3Q96PB7 478 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 RUFY1Q96T51 708 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 CDC42EP4Q9H3Q1 356 aaKnown RBP14.28□□□□□ -0.12
PTPRF-202ENST00000372405 ABCC13Q9NSE7 274 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 VPS18Q9P253 973 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 NUDT5Q9UKK9 219 aa14.28□□□□□ -0.12
PTPRF-202ENST00000372405 FAM92AA1XBS5 289 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 BCLAF3A2AJT9 711 aaKnown RBP14.27□□□□□ -0.12
PTPRF-202ENST00000372405 WDR27A2RRH5 827 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 H7C4K7 107 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 IRAK2O43187 625 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 RIPK2O43353 540 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 MFSD11O43934 449 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 NUDT17P0C025 328 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 CTCFP49711 727 aaPredicted RBP14.27□□□□□ -0.12
PTPRF-202ENST00000372405 GAD2Q05329 585 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 SLC29A2Q14542 456 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 CEP85LQ5SZL2 805 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 ANKRD22Q5VYY1 191 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 BTBD8Q5XKL5 378 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 MFSD5Q6N075 450 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 KCNT2Q6UVM3 1135 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 RFX8Q6ZV50 586 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 ZCCHC9Q8N567 271 aaKnown RBP14.27□□□□□ -0.12
PTPRF-202ENST00000372405 FBXO22Q8NEZ5 403 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 SPPL2BQ8TCT7 592 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 CPT1BQ92523 772 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 PRCCQ92733 491 aaPredicted RBP14.27□□□□□ -0.12
PTPRF-202ENST00000372405 RTP4Q96DX8 246 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 TKTL2Q9H0I9 626 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 SMOC2Q9H3U7 446 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 WDCPQ9H6R7 721 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 MTRRQ9UBK8 725 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 SFMBT1Q9UHJ3 866 aa14.27□□□□□ -0.12
PTPRF-202ENST00000372405 H3BRJ5 948 aa14.27□□□□□ -0.13
PTPRF-202ENST00000372405 DCLK1O15075 740 aa14.27□□□□□ -0.13
PTPRF-202ENST00000372405 MSI1O43347 362 aaKnown RBP14.27□□□□□ -0.13
PTPRF-202ENST00000372405 OPA1O60313 960 aa14.27□□□□□ -0.13
PTPRF-202ENST00000372405 RAG1P15918 1043 aa14.27□□□□□ -0.13
PTPRF-202ENST00000372405 ZFXP17010 805 aaPredicted RBP14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms