RNA–Protein interactions for RNA: ENST00000299633.6

HDGFL3-201, Transcript of HDGF like 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HDGFL3, Length 12,733 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-201ENST00000299633 RGS17Q9UGC6 210 aaPredicted RBP11.48□□□□□ -0.57
HDGFL3-201ENST00000299633 KIF26BQ2KJY2 2108 aa11.48□□□□□ -0.57
HDGFL3-201ENST00000299633 KDM4BO94953 1096 aa11.48□□□□□ -0.57
HDGFL3-201ENST00000299633 EPB41L4BQ9H329 900 aa11.48□□□□□ -0.57
HDGFL3-201ENST00000299633 EPB41L1Q9H4G0 881 aa11.48□□□□□ -0.57
HDGFL3-201ENST00000299633 HEY2Q9UBP5 337 aa11.48□□□□□ -0.57
HDGFL3-201ENST00000299633 PRPF3O43395 683 aaKnown RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 ZNF37AP17032 561 aaPredicted RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 MTFR1Q15390 333 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 PERM1Q5SV97 790 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 CXXC5Q7LFL8 322 aaKnown RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 FAM220AQ7Z4H9 259 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 EXOC3L1Q86VI1 746 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 FMR1NBQ8N0W7 255 aaPredicted RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 NACC2Q96BF6 587 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 FANCMQ8IYD8 2048 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 H2AFXP16104 143 aaPredicted RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 SLC26A3P40879 764 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 C12orf66Q96MD2 445 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 AMNQ9BXJ7 453 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 C15orf41Q9Y2V0 281 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 TBX22Q9Y458 520 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 C3orf70A6NLC5 250 aaPredicted RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 RBMXL2O75526 392 aaKnown RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 GSTM5P46439 218 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 HPS6Q86YV9 775 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 CAMKK1Q8N5S9 505 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 OR8H1Q8NGG4 311 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 PRCCQ92733 491 aaPredicted RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 DPF2Q92785 391 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 SYNDIG1Q9H7V2 258 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 TTC26A0AVF1 554 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 AGRPO00253 132 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 SPAG6O75602 509 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 GRIK1P39086 918 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 SLC29A2Q14542 456 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 RHEBQ15382 184 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 PLGRKTQ9HBL7 147 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 EDARQ9UNE0 448 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 BCLAF3A2AJT9 711 aaKnown RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 SULF1Q8IWU6 871 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 TRNAU1APQ9NX07 287 aaKnown RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 GRID1Q9ULK0 1009 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 EFR3BQ9Y2G0 817 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 TTLL13PA6NNM8 815 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 EFHC1Q5JVL4 640 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 ISLR2Q6UXK2 745 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 TRIM72Q6ZMU5 477 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 KYQ8NBH2 561 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 ATL2Q8NHH9 583 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 ZKSCAN4Q969J2 545 aaPredicted RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 APOL5Q9BWW9 433 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 ROPN1BQ9BZX4 212 aaPredicted RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 TTYH1Q9H313 450 aaPredicted RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 ROPN1Q9HAT0 212 aaPredicted RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 HPF1Q9NWY4 346 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 CHN2P52757 468 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 ZNF235Q14590 738 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 IRGCQ6NXR0 463 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 EEF1AKMT1Q8WVE0 214 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 LDHAP00338 332 aaKnown RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 MCAMP43121 646 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 NACC1Q96RE7 527 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 CHP1Q99653 195 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 E2F8A0AVK6 867 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 TMED8Q6PL24 325 aaPredicted RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 WRBO00258 174 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 TBXAS1P24557 533 aaPredicted RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 RPP38P78345 283 aaKnown RBP11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 RAD51Q06609 339 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 CLEC16AQ2KHT3 1053 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 FAM76BQ5HYJ3 339 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 TMEM270Q6UE05 265 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 FAR2Q96K12 515 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 SNX12Q9UMY4 172 aa11.47□□□□□ -0.57
HDGFL3-201ENST00000299633 SPTA1P02549 2419 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 XDHP47989 1333 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 POTEMA6NI47 508 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 FGFR2P21802 821 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 GUCY1A2P33402 732 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 POTEHQ6S545 545 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 POTEGQ6S5H5 508 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 OR6B3Q8NGW1 331 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 ELL3Q9HB65 397 aaPredicted RBP11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 DDX20Q9UHI6 824 aaKnown RBP11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 PRH1P02810 166 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 CPSF1Q10570 1443 aaKnown RBP11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 NECTIN1Q15223 517 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 RHOT1Q8IXI2 618 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 BORCS5Q969J3 196 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 SH3GLB2Q9NR46 395 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 PCDHGA10Q9Y5H3 936 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 H3BMM5 538 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 FOXN1O15353 648 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 FASP25445 335 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 NME5P56597 212 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 BCAR1P56945 870 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 TOP3AQ13472 1001 aaPredicted RBP11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 IL18R1Q13478 541 aa11.46□□□□□ -0.57
HDGFL3-201ENST00000299633 TRPV1Q8NER1 839 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms