RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CHKBQ9Y259 395 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 KDM5DQ9BY66 1539 aa14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 THOC2Q8NI27 1593 aaKnown RBP14.3□□□□□ -0.12
CCDC88A-201ENST00000263630 RHOBTB3O94955 611 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 PKP1Q13835 747 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 GRB14Q14449 540 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 CCDC54Q8NEL0 328 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 ZCCHC2Q9C0B9 1178 aaKnown RBP14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 XPR1Q9UBH6 696 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 NUMA1Q14980 2115 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 USP17L5A8MUK1 530 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 PGK1P00558 417 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 PNPLA4P41247 253 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 GRSF1Q12849 480 aaKnown RBP eCLIP14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 CCSAPQ6IQ19 270 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 DAW1Q8N136 415 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 OR7A2PQ8NGA2 310 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 C1QTNF7Q9BXJ2 289 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 PHTF1Q9UMS5 762 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 A2MP01023 1474 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 LDLRP01130 860 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 PDHA2P29803 388 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 PDX1P52945 283 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 KBTBD7Q8WVZ9 684 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 MS4A14Q96JA4 679 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 FAM210AQ96ND0 272 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 CIDEBQ9UHD4 219 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 PCDHA10Q9Y5I2 948 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 GPC6Q9Y625 555 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 METTL21EPA6NDL7 271 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 VPS72Q15906 364 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 C1orf189Q5VU69 101 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 ZNF655Q8N720 491 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 CPA5Q8WXQ8 436 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 GIT1Q9Y2X7 761 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 PLEKHG1Q9ULL1 1385 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 E2F8A0AVK6 867 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 SDR42E2A6NKP2 422 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 TRIM3O75382 744 aaPredicted RBP14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 CPA2P48052 419 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 RPS6KL1Q9Y6S9 549 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 ARHGEF12Q9NZN5 1544 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 MAGEB2O15479 319 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 PRKCBP05771 671 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 AVPR1AP37288 418 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 NR6A1Q15406 480 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 NEDD8Q15843 81 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 GLB1LQ6UWU2 654 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 HPS6Q86YV9 775 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 FICDQ9BVA6 458 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 TMEM117Q9H0C3 514 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 F5H5T6 163 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 GPR15P49685 360 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 FIG4Q92562 907 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 PPP1R14BQ96C90 147 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 SPATA5L1Q9BVQ7 753 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 COA1Q9GZY4 146 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 DBNDD1Q9H9R9 158 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 RGS10O43665 173 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 ADORA1P30542 326 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 MYBPC2Q14324 1141 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 CIAPIN1Q6FI81 312 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 PRR5LQ6MZQ0 368 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 POTEGQ6S5H5 508 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 C12orf4Q9NQ89 552 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 CORO2BQ9UQ03 480 aa14.29□□□□□ -0.12
CCDC88A-201ENST00000263630 H7C4K7 107 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 ODC1P11926 461 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 NEK7Q8TDX7 302 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 DGCR14Q96DF8 476 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 N6AMT1Q9Y5N5 214 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 NCF1BA6NI72 391 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 NCF1CA8MVU1 366 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 WRBO00258 174 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 NCF1P14598 390 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 RASA2Q15283 850 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 AADATQ8N5Z0 425 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 BHLHE41Q9C0J9 482 aaPredicted RBP14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 CKLFQ9UBR5 152 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 AGAP1Q9UPQ3 857 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 EGFRP00533 1210 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 SKIV2L2P42285 1042 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 IZUMO2Q6UXV1 221 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 ENGASEQ8NFI3 743 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 ERP44Q9BS26 406 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 DNAJC3Q13217 504 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 GALNT18Q6P9A2 607 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 POP5Q969H6 163 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 MTA3Q9BTC8 594 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 TOPBP1Q92547 1522 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 SEMA3DO95025 777 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 SERPINA1P01009 418 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 ITGALP20701 1170 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 CAPGP40121 348 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 ITGA8P53708 1063 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 DYNLL1P63167 89 aaKnown RBP14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 SCRN3Q0VDG4 424 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 MPP2Q14168 576 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 PDPK2PQ6A1A2 396 aa14.28□□□□□ -0.12
CCDC88A-201ENST00000263630 DPY30Q9C005 99 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms