RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 WBP2Q969T9 261 aa20.04■□□□□ 0.8
CCDC28A-203ENST00000617445 ARRDC1-AS1Q9H2J1 176 aa20.04■□□□□ 0.8
CCDC28A-203ENST00000617445 STARD13Q9Y3M8 1113 aa20.04■□□□□ 0.8
CCDC28A-203ENST00000617445 DYNC1LI1Q9Y6G9 523 aaKnown RBP20.04■□□□□ 0.8
CCDC28A-203ENST00000617445 DNAH14Q0VDD8 3507 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 PPP1R3GB7ZBB8 358 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 XPO1O14980 1071 aaKnown RBP20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 CACNG3O60359 315 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 KLF8O95600 359 aaPredicted RBP20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 CHRM1P11229 460 aaPredicted RBP20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 VDRP11473 427 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 CD44P16070 742 aaKnown RBP20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 KDSRQ06136 332 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 MESP2Q0VG99 397 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 BST2Q10589 180 aaKnown RBP20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 MORC3Q14149 939 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 ISM2Q6H9L7 571 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 GRAMD4Q6IC98 578 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 TTI2Q6NXR4 508 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 Q6ZNB5 142 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 NAT16Q8N8M0 369 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 TERB1Q8NA31 727 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 NELFBQ8WX92 580 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 NT5C1BQ96P26 610 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 BBS2Q9BXC9 721 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 DUSP15Q9H1R2 295 aaPredicted RBP20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 STRIP2Q9ULQ0 834 aa20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 CNOT1A5YKK6 2376 aaKnown RBP20.03■□□□□ 0.8
CCDC28A-203ENST00000617445 SLC30A4O14863 429 aa20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 STC2O76061 302 aa20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 ZBED1O96006 694 aa20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 PAEPP09466 180 aa20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 TYRP14679 529 aa20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 CHKAP35790 457 aa20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 BYSLQ13895 437 aaKnown RBP20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 PLA2G2CQ5R387 149 aa20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 ANO7Q6IWH7 933 aa20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 KLHL10Q6JEL2 608 aa20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 C12orf50Q8NA57 414 aaPredicted RBP20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 DNAJC17Q9NVM6 304 aaKnown RBP20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 NUDT5Q9UKK9 219 aa20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 TSPAN16Q9UKR8 245 aa20.02■□□□□ 0.8
CCDC28A-203ENST00000617445 NCOR2Q9Y618 2525 aa20.02■□□□□ 0.79
CCDC28A-203ENST00000617445 THADAQ6YHU6 1953 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 NEDD8-MDP1E9PL57 170 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 SGK1O00141 431 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 FGFR1OPO95684 399 aaKnown RBP20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 SETSIPP0DME0 302 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 CD19P15391 556 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 BMP6P22004 513 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 TKTL1P51854 596 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 LIMK1P53667 647 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 YWHAGP61981 247 aaKnown RBP eCLIP20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 GOLGA7BQ2TAP0 167 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 C10orf76Q5T2E6 689 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 EMC10Q5UCC4 262 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 TMEM92Q6UXU6 159 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 RSRC2Q7L4I2 434 aaKnown RBP20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 TTC30AQ86WT1 665 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 MIB1Q86YT6 1006 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 SFTPA1Q8IWL2 248 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 SCML4Q8N228 414 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 UBR7Q8N806 425 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 ZNF513Q8N8E2 541 aaPredicted RBP20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 TRIML1Q8N9V2 468 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 MDGA1Q8NFP4 955 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 LRRC4Q9HBW1 653 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 VPS45Q9NRW7 570 aa20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 OLA1Q9NTK5 396 aaKnown RBP20.01■□□□□ 0.79
CCDC28A-203ENST00000617445 MDM4O15151 490 aa20■□□□□ 0.79
CCDC28A-203ENST00000617445 GBP1P32455 592 aa20■□□□□ 0.79
CCDC28A-203ENST00000617445 MARSP56192 900 aaKnown RBP20■□□□□ 0.79
CCDC28A-203ENST00000617445 PDE4CQ08493 712 aa20■□□□□ 0.79
CCDC28A-203ENST00000617445 LRMPQ12912 555 aa20■□□□□ 0.79
CCDC28A-203ENST00000617445 STILQ15468 1287 aa20■□□□□ 0.79
CCDC28A-203ENST00000617445 AASDHQ4L235 1098 aaPredicted RBP20■□□□□ 0.79
CCDC28A-203ENST00000617445 SDE2Q6IQ49 451 aa20■□□□□ 0.79
CCDC28A-203ENST00000617445 LCLAT1Q6UWP7 414 aa20■□□□□ 0.79
CCDC28A-203ENST00000617445 TPGS1Q6ZTW0 290 aa20■□□□□ 0.79
CCDC28A-203ENST00000617445 OLIG1Q8TAK6 271 aa20■□□□□ 0.79
CCDC28A-203ENST00000617445 KCTD13Q8WZ19 329 aa20■□□□□ 0.79
CCDC28A-203ENST00000617445 DDX1Q92499 740 aaKnown RBP20■□□□□ 0.79
CCDC28A-203ENST00000617445 MARCH2Q9P0N8 246 aa20■□□□□ 0.79
CCDC28A-203ENST00000617445 RASAL2Q9UJF2 1139 aa20■□□□□ 0.79
CCDC28A-203ENST00000617445 NUP205Q92621 2012 aa20■□□□□ 0.79
CCDC28A-203ENST00000617445 O00370 1275 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 DCLK1O15075 740 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 ZBTB24O43167 697 aaPredicted RBP19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 ADAM23O75077 832 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 GADD45BO75293 160 aaPredicted RBP19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 NTSR1P30989 418 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 MPLP40238 635 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 EFEMP1Q12805 493 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 PAK1Q13153 545 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 E2F5Q15329 346 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 CNGA2Q16280 664 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 PMS2CLQ68D20 193 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 TMEM270Q6UE05 265 aa19.99■□□□□ 0.79
CCDC28A-203ENST00000617445 LMO3Q8TAP4 145 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms