RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 SLC6A3Q01959 620 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 ZNF268Q14587 947 aaPredicted RBP15.68■□□□□ 0.1
NUP54-213ENST00000513352 SLC18A3Q16572 532 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 EFHC1Q5JVL4 640 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 BSPRYQ5W0U4 402 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 DNAJC24Q6P3W2 148 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 OLFML1Q6UWY5 402 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 BHLHA9Q7RTU4 235 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 TADA2BQ86TJ2 420 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 ZDHHC17Q8IUH5 632 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 TMTC1Q8IUR5 882 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 ARL14EPQ8N8R7 260 aaPredicted RBP15.68■□□□□ 0.1
NUP54-213ENST00000513352 TRIM11Q96F44 468 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 TRIM62Q9BVG3 475 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 SELENOOQ9BVL4 669 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 METTL5Q9NRN9 209 aaKnown RBP15.68■□□□□ 0.1
NUP54-213ENST00000513352 OSER1Q9NX31 292 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 WDR35Q9P2L0 1181 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 MYO1AQ9UBC5 1043 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 RASAL2Q9UJF2 1139 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 NR2E1Q9Y466 385 aa15.68■□□□□ 0.1
NUP54-213ENST00000513352 MDM4O15151 490 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 NRDCO43847 1150 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 HSF2BPO75031 334 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 IPO7O95373 1038 aaKnown RBP15.67■□□□□ 0.1
NUP54-213ENST00000513352 ZDHHC11BP0C7U3 371 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 NCAM1P13591 858 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 HDCP19113 662 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 PTP4A2Q12974 167 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 TAF5Q15542 800 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 CCDC170Q8IYT3 715 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 ST13P5Q8NFI4 369 aaPredicted RBP15.67■□□□□ 0.1
NUP54-213ENST00000513352 ZSCAN18Q8TBC5 510 aaPredicted RBP15.67■□□□□ 0.1
NUP54-213ENST00000513352 ATXN2LQ8WWM7 1075 aaKnown RBP15.67■□□□□ 0.1
NUP54-213ENST00000513352 ZSWIM3Q96MP5 696 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 CYP2S1Q96SQ9 504 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 CDK5RAP1Q96SZ6 601 aaKnown RBP15.67■□□□□ 0.1
NUP54-213ENST00000513352 SLC46A2Q9BY10 475 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 SMG9Q9H0W8 520 aaKnown RBP15.67■□□□□ 0.1
NUP54-213ENST00000513352 ABCC13Q9NSE7 274 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 MTPAPQ9NVV4 582 aaKnown RBP eCLIP15.67■□□□□ 0.1
NUP54-213ENST00000513352 SMPD4Q9NXE4 827 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 GDE1Q9NZC3 331 aa15.67■□□□□ 0.1
NUP54-213ENST00000513352 TCF20Q9UGU0 1960 aaKnown RBP15.67■□□□□ 0.1
NUP54-213ENST00000513352 NUP210Q8TEM1 1887 aaPredicted RBP15.66■□□□□ 0.1
NUP54-213ENST00000513352 C2CD4DB7Z1M9 353 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 DPYSL4O14531 572 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 COCHO43405 550 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 GJB6O95452 261 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 TBX18O95935 607 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 OAS1P00973 400 aaKnown RBP15.66■□□□□ 0.1
NUP54-213ENST00000513352 RRM1P23921 792 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 TUBP50607 506 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 YWHAZP63104 245 aaKnown RBP15.66■□□□□ 0.1
NUP54-213ENST00000513352 EFEMP1Q12805 493 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 SPA17Q15506 151 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 ASTE1Q2TB18 679 aaPredicted RBP15.66■□□□□ 0.1
NUP54-213ENST00000513352 SNX30Q5VWJ9 437 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 SLC26A9Q7LBE3 791 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 MIB1Q86YT6 1006 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 CMTM8Q8IZV2 173 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 SLC22A12Q96S37 553 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 ISCUQ9H1K1 167 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 POPDC2Q9HBU9 364 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 OLA1Q9NTK5 396 aaKnown RBP15.66■□□□□ 0.1
NUP54-213ENST00000513352 ASNSD1Q9NWL6 643 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 CLIC5Q9NZA1 410 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 CNOT8Q9UFF9 292 aaKnown RBP15.66■□□□□ 0.1
NUP54-213ENST00000513352 ZMYM5Q9UJ78 669 aa15.66■□□□□ 0.1
NUP54-213ENST00000513352 HELZP42694 1942 aaKnown RBP15.66■□□□□ 0.1
NUP54-213ENST00000513352 COL6A3P12111 3177 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 ANKRD62A6NC57 917 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 DAB1O75553 588 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 GLI1P08151 1106 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 HMBSP08397 361 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 H2AFZP0C0S5 128 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 MYBL1P10243 752 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 IRF1P10914 325 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 LAMP2P13473 410 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 FECHP22830 423 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 ATP5C1P36542 298 aaKnown RBP15.65■□□□□ 0.1
NUP54-213ENST00000513352 SCNN1AP37088 669 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 MTF1Q14872 753 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 DCAF6Q58WW2 860 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 FAM78AQ5JUQ0 283 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 DCUN1D2Q6PH85 259 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 H2AFVQ71UI9 128 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 ARID3BQ8IVW6 561 aaPredicted RBP15.65■□□□□ 0.1
NUP54-213ENST00000513352 DEFB106AQ8N104 65 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 C3orf20Q8ND61 904 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 CCDC112Q8NEF3 446 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 CTNNBL1Q8WYA6 563 aaPredicted RBP15.65■□□□□ 0.1
NUP54-213ENST00000513352 VCPIP1Q96JH7 1222 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 ASB2Q96Q27 587 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 RNF38Q9H0F5 515 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 THAP2Q9H0W7 228 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 LUC7LQ9NQ29 371 aaKnown RBP15.65■□□□□ 0.1
NUP54-213ENST00000513352 MARCH2Q9P0N8 246 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 DNMT3LQ9UJW3 386 aa15.65■□□□□ 0.1
NUP54-213ENST00000513352 NAALADL1Q9UQQ1 740 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms