RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	PPP1R13B	Q96KQ4	1090 aa		11.22	□□□□□ -0.61
UBR4-208	ENST00000459947	CPQ	Q9Y646	472 aa		11.22	□□□□□ -0.61
UBR4-208	ENST00000459947	CHD9	Q3L8U1	2897 aa		11.22	□□□□□ -0.61
UBR4-208	ENST00000459947		A0A1W2PQH9	124 aa		11.22	□□□□□ -0.61
UBR4-208	ENST00000459947	HSF2BP	O75031	334 aa		11.22	□□□□□ -0.61
UBR4-208	ENST00000459947	ASGR2	P07307	311 aa		11.22	□□□□□ -0.61
UBR4-208	ENST00000459947	ZBED6	P86452	979 aa		11.22	□□□□□ -0.61
UBR4-208	ENST00000459947	NUDT18	Q6ZVK8	323 aa		11.22	□□□□□ -0.61
UBR4-208	ENST00000459947	EPS8L1	Q8TE68	723 aa		11.22	□□□□□ -0.61
UBR4-208	ENST00000459947	SERPINB11	Q96P15	392 aa		11.22	□□□□□ -0.61
UBR4-208	ENST00000459947	IRF2BPL	Q9H1B7	796 aa		11.22	□□□□□ -0.61
UBR4-208	ENST00000459947	ST7	Q9NRC1	585 aa		11.22	□□□□□ -0.61
UBR4-208	ENST00000459947	ANAPC1	Q9H1A4	1944 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	ADH1C	P00326	375 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	SLC2A3	P11169	496 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	PRKCI	P41743	596 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	ERICH1	Q86X53	443 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	UNC45B	Q8IWX7	931 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	DRC7	Q8IY82	874 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	ZSWIM3	Q96MP5	696 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	CD320	Q9NPF0	282 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	IFNK	Q9P0W0	207 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	LEFTY2	O00292	366 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	COCH	O43405	550 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	CLCN5	P51795	746 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	ARC	Q7LC44	396 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	AZIN2	Q96A70	460 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	ZNHIT6	Q9NWK9	470 aa	Known RBP	11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	DUS2	Q9NX74	493 aa	Known RBP	11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	AIPL1	Q9NZN9	384 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	STAP1	Q9ULZ2	295 aa		11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	LUC7L2	Q9Y383	392 aa	Known RBP	11.21	□□□□□ -0.61
UBR4-208	ENST00000459947	ANKRD62	A6NC57	917 aa		11.21	□□□□□ -0.62
UBR4-208	ENST00000459947	LCP1	P13796	627 aa		11.21	□□□□□ -0.62
UBR4-208	ENST00000459947	DGKK	Q5KSL6	1271 aa		11.21	□□□□□ -0.62
UBR4-208	ENST00000459947	NUGGC	Q68CJ6	796 aa		11.21	□□□□□ -0.62
UBR4-208	ENST00000459947	GPRIN1	Q7Z2K8	1008 aa		11.21	□□□□□ -0.62
UBR4-208	ENST00000459947	NCAPG	Q9BPX3	1015 aa		11.21	□□□□□ -0.62
UBR4-208	ENST00000459947	KLF16	Q9BXK1	252 aa	Predicted RBP	11.21	□□□□□ -0.62
UBR4-208	ENST00000459947	MARCH2	Q9P0N8	246 aa		11.21	□□□□□ -0.62
UBR4-208	ENST00000459947	DAB1	O75553	588 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	TNFAIP3	P21580	790 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	PBX1	P40424	430 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	EIF2D	P41214	584 aa	Known RBP	11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	GSC	P56915	257 aa	Predicted RBP	11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	STARD6	P59095	220 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	RING1	Q06587	406 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	PMF1	Q6P1K2	205 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	ZNF852	Q6ZMS4	543 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	HTR3D	Q70Z44	454 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	SLC47A2	Q86VL8	602 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	C18orf8	Q96DM3	657 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	VCPIP1	Q96JH7	1222 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	CHORDC1	Q9UHD1	332 aa	Predicted RBP	11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	SLC12A6	Q9UHW9	1150 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	RASAL2	Q9UJF2	1139 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	GOLGA6L6	A8MZA4	724 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	CAPN9	O14815	690 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	PRAMEF12	O95522	483 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	ERBB2	P04626	1255 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	NSF	P46459	744 aa	Known RBP	11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	GABRB2	P47870	512 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	CDK17	Q00537	523 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	TRIP4	Q15650	581 aa	Predicted RBP	11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	SLC44A4	Q53GD3	710 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	BSPRY	Q5W0U4	402 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	SLC26A9	Q7LBE3	791 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	SYNPO	Q8N3V7	929 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	FBXL6	Q8N531	539 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	AGPAT1	Q99943	283 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	ZSWIM1	Q9BR11	485 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	POPDC2	Q9HBU9	364 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	CFAP97	Q9P2B7	532 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	NOCT	Q9UK39	431 aa	Known RBP	11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	CAPN11	Q9UMQ6	739 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	C2orf78	A6NCI8	922 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	TEX33	O43247	280 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	CHKA	P35790	457 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	VIPR2	P41587	438 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	RGS7	P49802	495 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	RUNX3	Q13761	415 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	STXBP5	Q5T5C0	1151 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	SCD5	Q86SK9	330 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	LCMT1	Q9UIC8	334 aa		11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	AJAP1	Q9UKB5	411 aa	Predicted RBP	11.2	□□□□□ -0.62
UBR4-208	ENST00000459947	CYP1A1	P04798	512 aa	Predicted RBP	11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	HARS2	P49590	506 aa	Known RBP	11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	SLC6A3	Q01959	620 aa		11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	SPECC1L	Q69YQ0	1117 aa		11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	OR6B2	Q6IFH4	312 aa		11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	NAP1L5	Q96NT1	182 aa	Predicted RBP	11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	FAM83C	Q9BQN1	747 aa		11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	SMOC2	Q9H3U7	446 aa		11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	F9	P00740	461 aa		11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	YWHAZ	P63104	245 aa	Known RBP	11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	NOMO3	P69849	1222 aa		11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	GAD2	Q05329	585 aa		11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	C1QBP	Q07021	282 aa	Known RBP	11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	NOP9	Q86U38	636 aa	Known RBP	11.19	□□□□□ -0.62
UBR4-208	ENST00000459947	PHF13	Q86YI8	300 aa	Predicted RBP	11.19	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms