RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 TRPV1Q8NER1 839 aa9.42□□□□□ -0.9
TDP1-202ENST00000393452 ZFP42Q96MM3 310 aa9.42□□□□□ -0.9
TDP1-202ENST00000393452 DUSP16Q9BY84 665 aa9.42□□□□□ -0.9
TDP1-202ENST00000393452 ACSS3Q9H6R3 686 aa9.42□□□□□ -0.9
TDP1-202ENST00000393452 NRDE2Q9H7Z3 1164 aa9.42□□□□□ -0.9
TDP1-202ENST00000393452 PAK5Q9P286 719 aa9.42□□□□□ -0.9
TDP1-202ENST00000393452 TSC2P49815 1807 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 FAM47DPA6NHR8 397 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 POC1B-GALNT4F8VUJ3 575 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 H7C0C1 242 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 PRPF4O43172 522 aaKnown RBP eCLIP9.41□□□□□ -0.9
TDP1-202ENST00000393452 OAS1P00973 400 aaKnown RBP9.41□□□□□ -0.9
TDP1-202ENST00000393452 VIMP08670 466 aaKnown RBP9.41□□□□□ -0.9
TDP1-202ENST00000393452 LCP1P13796 627 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 CYP2F1P24903 491 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 CTGFP29279 349 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 SSTR1P30872 391 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 MATKP42679 507 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 ATP5OP48047 213 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 LIG3P49916 1009 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 GEMIN4P57678 1058 aaKnown RBP9.41□□□□□ -0.9
TDP1-202ENST00000393452 GJA9P57773 515 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 XRCC4Q13426 336 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 RGMBQ6NW40 437 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 C3orf62Q6ZUJ4 267 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 PAQR9Q6ZVX9 377 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 BNIPLQ7Z465 357 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 PIGZQ86VD9 579 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 FBXO36Q8NEA4 188 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 MGARPQ8TDB4 240 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 DENND1AQ8TEH3 1009 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 DYDC1Q8WWB3 177 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 CCT6BQ92526 530 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 NT5C3BQ969T7 300 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 NSRP1Q9H0G5 558 aaKnown RBP9.41□□□□□ -0.9
TDP1-202ENST00000393452 SAMD15Q9P1V8 674 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 PSMC3IPQ9P2W1 217 aaPredicted RBP9.41□□□□□ -0.9
TDP1-202ENST00000393452 SNX3O60493 162 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 TOMM70O94826 608 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 SLC10A3P09131 477 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 CYBAP13498 195 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 NR2C2P49116 596 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 ATXN1P54253 815 aaKnown RBP9.41□□□□□ -0.9
TDP1-202ENST00000393452 WDR4P57081 412 aaKnown RBP9.41□□□□□ -0.9
TDP1-202ENST00000393452 NKX3-2P78367 333 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 ADCY1Q08828 1119 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 PKN2Q16513 984 aaKnown RBP9.41□□□□□ -0.9
TDP1-202ENST00000393452 LACTB2Q53H82 288 aaPredicted RBP9.41□□□□□ -0.9
TDP1-202ENST00000393452 ADGRD1Q6QNK2 874 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 CAPN12Q6ZSI9 719 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 CCDC121Q6ZUS5 278 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 ANKS4BQ8N8V4 417 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 ANKRD42Q8N9B4 389 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 KCTD13Q8WZ19 329 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 MAGEB18Q96M61 343 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 MTG1Q9BT17 334 aaPredicted RBP9.41□□□□□ -0.9
TDP1-202ENST00000393452 FRMD8Q9BZ67 464 aaPredicted RBP9.41□□□□□ -0.9
TDP1-202ENST00000393452 TRABDQ9H4I3 376 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 ZFYVE28Q9HCC9 887 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 SLC38A7Q9NVC3 462 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 NKIRAS1Q9NYS0 192 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.41□□□□□ -0.9
TDP1-202ENST00000393452 AP4E1Q9UPM8 1137 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 HEY1Q9Y5J3 304 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 CDY2AQ9Y6F7 541 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 USP3Q9Y6I4 520 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 TEX264Q9Y6I9 313 aa9.41□□□□□ -0.9
TDP1-202ENST00000393452 GOLGA6L7A0A1B0GV03 622 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 TCP11X1B4DZS4 312 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 CYB561D2O14569 222 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 KCNN4O15554 427 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 ATP2C2O75185 946 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 C6orf222P0C671 652 aaPredicted RBP9.4□□□□□ -0.9
TDP1-202ENST00000393452 ZFXP17010 805 aaPredicted RBP9.4□□□□□ -0.9
TDP1-202ENST00000393452 NPR3P17342 541 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 PTPN1P18031 435 aaKnown RBP9.4□□□□□ -0.9
TDP1-202ENST00000393452 RBL1P28749 1068 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 KLHL38Q2WGJ6 581 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 SLC25A52Q3SY17 297 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 BBS9Q3SYG4 887 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 PPP6R3Q5H9R7 873 aaPredicted RBP9.4□□□□□ -0.9
TDP1-202ENST00000393452 GNASQ5JWF2 1037 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 RNF187Q5TA31 235 aaPredicted RBP9.4□□□□□ -0.9
TDP1-202ENST00000393452 WSCD1Q658N2 575 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 C4orf22Q6V702 233 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 RPAINQ86UA6 219 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 PSTKQ8IV42 348 aaKnown RBP9.4□□□□□ -0.9
TDP1-202ENST00000393452 IGDCC3Q8IVU1 814 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 TAB3Q8N5C8 712 aaPredicted RBP9.4□□□□□ -0.9
TDP1-202ENST00000393452 ELAC2Q9BQ52 826 aaKnown RBP9.4□□□□□ -0.9
TDP1-202ENST00000393452 UPF3AQ9H1J1 476 aaKnown RBP9.4□□□□□ -0.9
TDP1-202ENST00000393452 TSPYL2Q9H2G4 693 aaPredicted RBP9.4□□□□□ -0.9
TDP1-202ENST00000393452 KDM4CQ9H3R0 1056 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 MLXIPLQ9NP71 852 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 SSU72Q9NP77 194 aaKnown RBP9.4□□□□□ -0.9
TDP1-202ENST00000393452 NMRK2Q9NPI5 230 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 CHST12Q9NRB3 414 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 FAM105AQ9NUU6 356 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 FGFR1OP2Q9NVK5 253 aa9.4□□□□□ -0.9
TDP1-202ENST00000393452 ST3GAL5Q9UNP4 418 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms