RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 PRKAA1Q13131 559 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 FAM193BQ96PV7 902 aaPredicted RBP19.92■□□□□ 0.78
USP48-201ENST00000308271 DDX50Q9BQ39 737 aaKnown RBP19.92■□□□□ 0.78
USP48-201ENST00000308271 RPTORQ8N122 1335 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 SP100P23497 879 aaPredicted RBP19.92■□□□□ 0.78
USP48-201ENST00000308271 XIAPP98170 497 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 NFIL3Q16649 462 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 SGF29Q96ES7 293 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 DENND2DQ9H6A0 471 aaPredicted RBP19.92■□□□□ 0.78
USP48-201ENST00000308271 EBF2Q9HAK2 575 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 UBA6A0AVT1 1052 aaPredicted RBP19.92■□□□□ 0.78
USP48-201ENST00000308271 MEIS2O14770 477 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 RGL2O15211 777 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 EIF4BP23588 611 aaKnown RBP19.92■□□□□ 0.78
USP48-201ENST00000308271 KCNK10P57789 538 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 EVX2Q03828 476 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 C16orf72Q14CZ0 275 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 GPR162Q16538 588 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 TTC27Q6P3X3 843 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 NIPA1Q7RTP0 329 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 ULK2Q8IYT8 1036 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 DACH2Q96NX9 599 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 TBCBQ99426 244 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 FBXO6Q9NRD1 293 aaPredicted RBP19.92■□□□□ 0.78
USP48-201ENST00000308271 ARL8BQ9NVJ2 186 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 GPATCH2LQ9NWQ4 482 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 GRHL1Q9NZI5 618 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 ZNF70Q9UC06 446 aaPredicted RBP19.92■□□□□ 0.78
USP48-201ENST00000308271 NR2E1Q9Y466 385 aa19.92■□□□□ 0.78
USP48-201ENST00000308271 NFAT5O94916 1531 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 ITGB3P05106 788 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 GLRA2P23416 452 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 PTGIRP43119 386 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 ACAP1Q15027 740 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 CROCCP3Q8IVE0 287 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 PALMDQ9NP74 551 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 CLIC5Q9NZA1 410 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 NCKIPSDQ9NZQ3 722 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 TMEM59LQ9UK28 342 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 GAS2O43903 313 aaKnown RBP19.91■□□□□ 0.78
USP48-201ENST00000308271 PSMD10O75832 226 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 USP1O94782 785 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 SLC25A3Q00325 362 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 C12orf50Q8NA57 414 aaPredicted RBP19.91■□□□□ 0.78
USP48-201ENST00000308271 PIK3R5Q8WYR1 880 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 GRIP2Q9C0E4 1043 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 HEATR9A2RTY3 570 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 GTF2BQ00403 316 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 PTPN11Q06124 597 aaPredicted RBP19.91■□□□□ 0.78
USP48-201ENST00000308271 MPP3Q13368 585 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 ARCQ7LC44 396 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 USP13Q92995 863 aaPredicted RBP19.91■□□□□ 0.78
USP48-201ENST00000308271 DCPSQ96C86 337 aaKnown RBP19.91■□□□□ 0.78
USP48-201ENST00000308271 CDRT15Q96T59 188 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 NDNQ99608 321 aa19.91■□□□□ 0.78
USP48-201ENST00000308271 RIMBP3CA6NJZ7 1639 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 RIMBP3BA6NNM3 1639 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 RIMBP3Q9UFD9 1639 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 A0A1W2PPM1 405 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 ALDH1A3P47895 512 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 SLC15A2Q16348 729 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 VTI1BQ9UEU0 232 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 ARHGEF9O43307 516 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 TOMM70O94826 608 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 PRKAA2P54646 552 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 DCAF6Q58WW2 860 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 C6orf10Q5SRN2 563 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 CDC26Q8NHZ8 85 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 ZNF317Q96PQ6 595 aaPredicted RBP19.9■□□□□ 0.78
USP48-201ENST00000308271 HSD17B14Q9BPX1 270 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 SP110Q9HB58 689 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 HACD3Q9P035 362 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 COG5Q9UP83 839 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 RUVBL2Q9Y230 463 aaKnown RBP19.9■□□□□ 0.78
USP48-201ENST00000308271 DDTLA6NHG4 134 aaPredicted RBP19.9■□□□□ 0.78
USP48-201ENST00000308271 CHADO15335 359 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 SERPINA6P08185 405 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 RPL22P35268 128 aaKnown RBP19.9■□□□□ 0.78
USP48-201ENST00000308271 HADHAP40939 763 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 HADHBP55084 474 aaKnown RBP19.9■□□□□ 0.78
USP48-201ENST00000308271 RNF220Q5VTB9 566 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 AGAP9Q5VTM2 703 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 EFL1Q7Z2Z2 1120 aaKnown RBP19.9■□□□□ 0.78
USP48-201ENST00000308271 SH3TC2Q8TF17 1288 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 ELMO3Q96BJ8 720 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP19.9■□□□□ 0.784e-7■■■■□ 26.4
USP48-201ENST00000308271 WTIPA6NIX2 430 aaPredicted RBP19.9■□□□□ 0.78
USP48-201ENST00000308271 SNX32Q86XE0 403 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 SEPT12Q8IYM1 358 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 ATPAF2Q8N5M1 289 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.9■□□□□ 0.78
USP48-201ENST00000308271 USP33Q8TEY7 942 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 FHDC1Q9C0D6 1143 aaPredicted RBP19.9■□□□□ 0.78
USP48-201ENST00000308271 STN1Q9H668 368 aaKnown RBP19.9■□□□□ 0.78
USP48-201ENST00000308271 ZDHHC18Q9NUE0 388 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 ACOT9Q9Y305 439 aa19.9■□□□□ 0.78
USP48-201ENST00000308271 ANKRD63C9JTQ0 380 aa19.89■□□□□ 0.78
USP48-201ENST00000308271 MPOP05164 745 aa19.89■□□□□ 0.78
USP48-201ENST00000308271 KDELR1P24390 212 aa19.89■□□□□ 0.78
USP48-201ENST00000308271 RBBP7Q16576 425 aa19.89■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms