RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 GPRC5AQ8NFJ5 357 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 SMARCAD1Q9H4L7 1026 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 GGA3Q9NZ52 723 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 MLXQ9UH92 298 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 PFDN2Q9UHV9 154 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 SYNPO2Q9UMS6 1093 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 VPS4AQ9UN37 437 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 F5H6K3 240 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 ZNF806P0C7X5 589 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 ITGA8P53708 1063 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 OSTNP61366 133 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 ERVK-24P63145 666 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 KLRC3Q07444 240 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 NUP93Q8N1F7 819 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 AMER2Q8N7J2 671 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 SHCBP1Q8NEM2 672 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 PSMA8Q8TAA3 256 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 SH3TC2Q8TF17 1288 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 PROX1Q92786 737 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 WNK4Q96J92 1243 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 C15orf38-AP3S2A0A0A6YYH1 394 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 YWHABP31946 246 aaKnown RBP13.72□□□□□ -0.21
USP40-208ENST00000450966 CDK16Q00536 496 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 C5orf22Q49AR2 442 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 ARPINQ7Z6K5 226 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 ANKMY2Q8IV38 441 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 KCTD17Q8N5Z5 321 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 LRRIQ1Q96JM4 1722 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 CRNNQ9UBG3 495 aaPredicted RBP13.72□□□□□ -0.21
USP40-208ENST00000450966 TRPC5OSA6NMA1 111 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 COQ9O75208 318 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 DHRSXQ8N5I4 330 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.72□□□□□ -0.21
USP40-208ENST00000450966 SNX31Q8N9S9 440 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 ASAP3Q8TDY4 903 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 TUFT1Q9NNX1 390 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 WHRNQ9P202 907 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 TPRKBQ9Y3C4 175 aa13.72□□□□□ -0.21
USP40-208ENST00000450966 CCL15-CCL14A0A0B4J2E2 113 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 SAGE2PA6NJ88 616 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 LGR5O75473 907 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 SLC9A1P19634 815 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 TALDO1P37837 337 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 CENPCQ03188 943 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 KCNH2Q12809 1159 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 ZNF268Q14587 947 aaPredicted RBP13.71□□□□□ -0.21
USP40-208ENST00000450966 CCL15Q16663 113 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 ANO4Q32M45 955 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 BROXQ5VW32 411 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 DENND5AQ6IQ26 1287 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 ZNF589Q86UQ0 364 aaPredicted RBP13.71□□□□□ -0.21
USP40-208ENST00000450966 TTC8Q8TAM2 541 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 KIAA1683Q9H0B3 1180 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 CLK4Q9HAZ1 481 aaKnown RBP13.71□□□□□ -0.21
USP40-208ENST00000450966 GH1P01241 217 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 CYP11B2P19099 503 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 EIF4BP23588 611 aaKnown RBP13.71□□□□□ -0.21
USP40-208ENST00000450966 GTF2H1P32780 548 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 ANGEL2Q5VTE6 544 aaKnown RBP13.71□□□□□ -0.21
USP40-208ENST00000450966 TMC3Q7Z5M5 1100 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 TSEN2Q8NCE0 465 aaKnown RBP13.71□□□□□ -0.21
USP40-208ENST00000450966 PHC3Q8NDX5 983 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 VPS37AQ8NEZ2 397 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 TAMM41Q96BW9 452 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 TRIM49D1C9J1S8 452 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 PARNO95453 639 aaKnown RBP13.71□□□□□ -0.21
USP40-208ENST00000450966 P4HBP07237 508 aaKnown RBP13.71□□□□□ -0.21
USP40-208ENST00000450966 CD58P19256 250 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 KYQ8NBH2 561 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 DIS3LQ8TF46 1054 aaKnown RBP13.71□□□□□ -0.21
USP40-208ENST00000450966 DCLK3Q9C098 648 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 ADAM22Q9P0K1 906 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.71□□□□□ -0.21
USP40-208ENST00000450966 SLC13A4Q9UKG4 626 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 SORCS3Q9UPU3 1222 aa13.71□□□□□ -0.21
USP40-208ENST00000450966 CCRL2O00421 344 aa13.71□□□□□ -0.22
USP40-208ENST00000450966 H2AFYO75367 372 aaKnown RBP13.71□□□□□ -0.22
USP40-208ENST00000450966 NTSR2O95665 410 aa13.71□□□□□ -0.22
USP40-208ENST00000450966 PABPC1P11940 636 aaKnown RBP13.71□□□□□ -0.22
USP40-208ENST00000450966 COILP38432 576 aaPredicted RBP13.71□□□□□ -0.22
USP40-208ENST00000450966 EFNA5P52803 228 aa13.71□□□□□ -0.22
USP40-208ENST00000450966 HPCAP84074 193 aa13.71□□□□□ -0.22
USP40-208ENST00000450966 COX10Q12887 443 aa13.71□□□□□ -0.22
USP40-208ENST00000450966 NFX1Q12986 1120 aaKnown RBP13.71□□□□□ -0.22
USP40-208ENST00000450966 CKAP2Q8WWK9 683 aa13.71□□□□□ -0.22
USP40-208ENST00000450966 CCSER1Q9C0I3 900 aa13.71□□□□□ -0.22
USP40-208ENST00000450966 FAM49AQ9H0Q0 323 aaPredicted RBP13.71□□□□□ -0.22
USP40-208ENST00000450966 VPS45Q9NRW7 570 aa13.71□□□□□ -0.22
USP40-208ENST00000450966 AGPAT5Q9NUQ2 364 aa13.71□□□□□ -0.22
USP40-208ENST00000450966 UVRAGQ9P2Y5 699 aa13.71□□□□□ -0.22
USP40-208ENST00000450966 PLCL2Q9UPR0 1127 aa13.71□□□□□ -0.22
USP40-208ENST00000450966 MAGEB2O15479 319 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 SIN3BO75182 1162 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 FTLP02792 175 aaPredicted RBP13.7□□□□□ -0.22
USP40-208ENST00000450966 AQP5P55064 265 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 KRT33BQ14525 404 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 PFKFB3Q16875 520 aaPredicted RBP13.7□□□□□ -0.22
USP40-208ENST00000450966 C9orf131Q5VYM1 1079 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 RASSF6Q6ZTQ3 369 aa13.7□□□□□ -0.22
USP40-208ENST00000450966 AHI1Q8N157 1196 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms