RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 POPDC2Q9HBU9 364 aa28.07■■■□□ 2.08
MSX1-201ENST00000382723 TNFRSF10BO14763 440 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 SART1O43290 800 aaKnown RBP28.06■■■□□ 2.08
MSX1-201ENST00000382723 MATKP42679 507 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 SMARCB1Q12824 385 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 DUSP4Q13115 394 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 ERCC6LQ2NKX8 1250 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 SMTNL2Q2TAL5 461 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 CCDC50Q8IVM0 306 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 GPR152Q8TDT2 470 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 UBXN4Q92575 508 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 CLP1Q92989 425 aaKnown RBP28.06■■■□□ 2.08
MSX1-201ENST00000382723 RPGRIP1Q96KN7 1286 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 AP1M1Q9BXS5 423 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 USP18Q9UMW8 372 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 KRT1P04264 644 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 GLI1P08151 1106 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 PTPN9P43378 593 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 KCNT1Q5JUK3 1230 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 PM20D1Q6GTS8 502 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 SCYL2Q6P3W7 929 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 RBM12Q9NTZ6 932 aaKnown RBP28.06■■■□□ 2.08
MSX1-201ENST00000382723 TTC7AQ9ULT0 858 aaPredicted RBP28.06■■■□□ 2.08
MSX1-201ENST00000382723 USP3Q9Y6I4 520 aa28.06■■■□□ 2.08
MSX1-201ENST00000382723 PI4K2BG5E9Z4 385 aa28.05■■■□□ 2.08
MSX1-201ENST00000382723 CAPN9O14815 690 aa28.05■■■□□ 2.08
MSX1-201ENST00000382723 ZRANB2O95218 330 aaKnown RBP eCLIP28.05■■■□□ 2.08
MSX1-201ENST00000382723 PCK1P35558 622 aa28.05■■■□□ 2.08
MSX1-201ENST00000382723 SMC1AQ14683 1233 aaKnown RBP28.05■■■□□ 2.08
MSX1-201ENST00000382723 RSRC2Q7L4I2 434 aaKnown RBP28.05■■■□□ 2.08
MSX1-201ENST00000382723 BHLHA9Q7RTU4 235 aa28.05■■■□□ 2.08
MSX1-201ENST00000382723 KLHL23Q8NBE8 558 aa28.05■■■□□ 2.08
MSX1-201ENST00000382723 SP7Q8TDD2 431 aaPredicted RBP28.05■■■□□ 2.08
MSX1-201ENST00000382723 RNF25Q96BH1 459 aaPredicted RBP28.05■■■□□ 2.08
MSX1-201ENST00000382723 TBCBQ99426 244 aa28.05■■■□□ 2.08
MSX1-201ENST00000382723 PLVAPQ9BX97 442 aa28.05■■■□□ 2.08
MSX1-201ENST00000382723 ADAM33Q9BZ11 813 aa28.05■■■□□ 2.08
MSX1-201ENST00000382723 NAALADL1Q9UQQ1 740 aa28.05■■■□□ 2.08
MSX1-201ENST00000382723 PTPRDP23468 1912 aa28.05■■■□□ 2.08
MSX1-201ENST00000382723 TRUB2O95900 331 aaKnown RBP28.04■■■□□ 2.08
MSX1-201ENST00000382723 LTFP02788 710 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 CA8P35219 290 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 SULT1E1P49888 294 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 ODF2Q5BJF6 829 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 SYPL2Q5VXT5 272 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 C2orf15Q8WU43 125 aaKnown RBP28.04■■■□□ 2.08
MSX1-201ENST00000382723 SLC2A13Q96QE2 648 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 KRIT1O00522 736 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 KRT7P08729 469 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 NOS2P35228 1153 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 C9orf50Q5SZB4 431 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 POLNQ7Z5Q5 900 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 NUP93Q8N1F7 819 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 EXD1Q8NHP7 514 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 IRGQQ8WZA9 623 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 EDEM1Q92611 657 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 PEBP4Q96S96 227 aa28.04■■■□□ 2.08
MSX1-201ENST00000382723 C11orf84Q9BUA3 381 aaPredicted RBP28.04■■■□□ 2.08
MSX1-201ENST00000382723 FYNP06241 537 aa28.03■■■□□ 2.08
MSX1-201ENST00000382723 HAPLN1P10915 354 aaPredicted RBP28.03■■■□□ 2.08
MSX1-201ENST00000382723 ATXN1P54253 815 aaKnown RBP28.03■■■□□ 2.08
MSX1-201ENST00000382723 HDAC4P56524 1084 aa28.03■■■□□ 2.08
MSX1-201ENST00000382723 HSPH1Q92598 858 aa28.03■■■□□ 2.08
MSX1-201ENST00000382723 NAP1L3Q99457 506 aaPredicted RBP28.03■■■□□ 2.08
MSX1-201ENST00000382723 MRPL17Q9NRX2 175 aaKnown RBP28.03■■■□□ 2.08
MSX1-201ENST00000382723 DDX56Q9NY93 547 aaKnown RBP28.03■■■□□ 2.08
MSX1-201ENST00000382723 PRPSAP2O60256 369 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 NCAM1P13591 858 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 PITX1P78337 314 aaPredicted RBP28.02■■■□□ 2.08
MSX1-201ENST00000382723 SLC25A52Q3SY17 297 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 RASIP1Q5U651 963 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 RAPGEF5Q92565 580 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 KIAA1671Q9BY89 1806 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 LAMA2P24043 3122 aaKnown RBP28.02■■■□□ 2.08
MSX1-201ENST00000382723 SYNJ2BP-COX16A0A087WUM0 186 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 ITIH3Q06033 890 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 ELF2Q15723 593 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 BSPRYQ5W0U4 402 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 RCOR2Q8IZ40 523 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 SCML4Q8N228 414 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 CENPIQ92674 756 aaPredicted RBP28.02■■■□□ 2.08
MSX1-201ENST00000382723 EPC1Q9H2F5 836 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 COX16Q9P0S2 106 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 CALCOCO1Q9P1Z2 691 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 STAP1Q9ULZ2 295 aa28.02■■■□□ 2.08
MSX1-201ENST00000382723 TCRBV7S2A1N4TA0A589 114 aa28.01■■■□□ 2.07
MSX1-201ENST00000382723 LRRD1A4D1F6 860 aa28.01■■■□□ 2.07
MSX1-201ENST00000382723 RARAP10276 462 aa28.01■■■□□ 2.07
MSX1-201ENST00000382723 CTNNB1P35222 781 aa28.01■■■□□ 2.07
MSX1-201ENST00000382723 MAGEA10P43363 369 aaPredicted RBP28.01■■■□□ 2.07
MSX1-201ENST00000382723 USP46P62068 366 aa28.01■■■□□ 2.07
MSX1-201ENST00000382723 SLC13A5Q86YT5 568 aaPredicted RBP28.01■■■□□ 2.07
MSX1-201ENST00000382723 RBM41Q96IZ5 413 aaKnown RBP28.01■■■□□ 2.07
MSX1-201ENST00000382723 HEMGNQ9BXL5 484 aa28.01■■■□□ 2.07
MSX1-201ENST00000382723 NR2E1Q9Y466 385 aa28.01■■■□□ 2.07
MSX1-201ENST00000382723 MYOGP15173 224 aa28■■■□□ 2.07
MSX1-201ENST00000382723 CLUL1Q15846 466 aa28■■■□□ 2.07
MSX1-201ENST00000382723 ANKS1BQ7Z6G8 1248 aa28■■■□□ 2.07
MSX1-201ENST00000382723 ZNF461Q8TAF7 563 aa28■■■□□ 2.07
MSX1-201ENST00000382723 ADAM32Q8TC27 787 aa28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms