RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 CD46P15529 392 aa4.87□□□□□ -1.63
HMGB1-208ENST00000490788 GCGRP47871 477 aa4.87□□□□□ -1.63
HMGB1-208ENST00000490788 SPRYD7Q5W111 196 aa4.87□□□□□ -1.63
HMGB1-208ENST00000490788 ANKLE1Q8NAG6 615 aa4.87□□□□□ -1.63
HMGB1-208ENST00000490788 KDM4AO75164 1064 aa4.86□□□□□ -1.63
HMGB1-208ENST00000490788 ATP6V1AP38606 617 aa4.86□□□□□ -1.63
HMGB1-208ENST00000490788 USP46P62068 366 aa4.86□□□□□ -1.63
HMGB1-208ENST00000490788 DIXDC1Q155Q3 683 aa4.86□□□□□ -1.63
HMGB1-208ENST00000490788 NEUROD2Q15784 382 aa4.86□□□□□ -1.63
HMGB1-208ENST00000490788 BEGAINQ9BUH8 593 aa4.86□□□□□ -1.63
HMGB1-208ENST00000490788 ATP1B4Q9UN42 357 aaPredicted RBP4.86□□□□□ -1.63
HMGB1-208ENST00000490788 PRKCSHP14314 528 aaPredicted RBP4.85□□□□□ -1.63
HMGB1-208ENST00000490788 FUT2Q10981 343 aa4.85□□□□□ -1.63
HMGB1-208ENST00000490788 LCE3BQ5TA77 95 aa4.85□□□□□ -1.63
HMGB1-208ENST00000490788 BLOC1S3Q6QNY0 202 aa4.85□□□□□ -1.63
HMGB1-208ENST00000490788 EMID1Q96A84 441 aaPredicted RBP4.85□□□□□ -1.63
HMGB1-208ENST00000490788 BTBD11A6QL63 1104 aa4.84□□□□□ -1.63
HMGB1-208ENST00000490788 PUS10Q3MIT2 529 aaKnown RBP4.84□□□□□ -1.63
HMGB1-208ENST00000490788 ZSCAN1Q8NBB4 408 aa4.84□□□□□ -1.63
HMGB1-208ENST00000490788 REPIN1Q9BWE0 567 aaKnown RBP4.84□□□□□ -1.63
HMGB1-208ENST00000490788 Q3C1V9 767 aa4.83□□□□□ -1.64
HMGB1-208ENST00000490788 DDRGK1Q96HY6 314 aa4.83□□□□□ -1.64
HMGB1-208ENST00000490788 KDM4CQ9H3R0 1056 aa4.83□□□□□ -1.64
HMGB1-208ENST00000490788 GPBP1L1Q9HC44 474 aaPredicted RBP4.83□□□□□ -1.64
HMGB1-208ENST00000490788 GDF9O60383 454 aa4.82□□□□□ -1.64
HMGB1-208ENST00000490788 ADH1BP00325 375 aa4.82□□□□□ -1.64
HMGB1-208ENST00000490788 MS4A1P11836 297 aa4.82□□□□□ -1.64
HMGB1-208ENST00000490788 ZNF697Q5TEC3 545 aa4.82□□□□□ -1.64
HMGB1-208ENST00000490788 LIAT1Q6ZQX7 453 aa4.82□□□□□ -1.64
HMGB1-208ENST00000490788 KCTD17Q8N5Z5 321 aa4.82□□□□□ -1.64
HMGB1-208ENST00000490788 RSPH6AQ9H0K4 717 aa4.82□□□□□ -1.64
HMGB1-208ENST00000490788 KRTAP4-8A0A0G2JLE6 195 aa4.81□□□□□ -1.64
HMGB1-208ENST00000490788 HOXA2O43364 376 aa4.81□□□□□ -1.64
HMGB1-208ENST00000490788 FMNL1O95466 1100 aaPredicted RBP4.81□□□□□ -1.64
HMGB1-208ENST00000490788 S1PR4O95977 384 aa4.81□□□□□ -1.64
HMGB1-208ENST00000490788 KCNMA1Q12791 1236 aa4.81□□□□□ -1.64
HMGB1-208ENST00000490788 MORN1Q5T089 497 aa4.81□□□□□ -1.64
HMGB1-208ENST00000490788 SCUBE3Q8IX30 993 aa4.81□□□□□ -1.64
HMGB1-208ENST00000490788 TLL1O43897 1013 aa4.8□□□□□ -1.64
HMGB1-208ENST00000490788 FDX1P10109 184 aa4.8□□□□□ -1.64
HMGB1-208ENST00000490788 LCE2CQ5TA81 110 aa4.8□□□□□ -1.64
HMGB1-208ENST00000490788 SPIRE2Q8WWL2 714 aa4.8□□□□□ -1.64
HMGB1-208ENST00000490788 SPSB2Q99619 263 aa4.8□□□□□ -1.64
HMGB1-208ENST00000490788 TBC1D2Q9BYX2 928 aa4.8□□□□□ -1.64
HMGB1-208ENST00000490788 AAASQ9NRG9 546 aa4.8□□□□□ -1.64
HMGB1-208ENST00000490788 SLC27A5Q9Y2P5 690 aa4.8□□□□□ -1.64
HMGB1-208ENST00000490788 FAM187AA6NFU0 413 aa4.79□□□□□ -1.64
HMGB1-208ENST00000490788 C6orf229H3BNL8 230 aa4.79□□□□□ -1.64
HMGB1-208ENST00000490788 PPEF1O14829 653 aaPredicted RBP4.79□□□□□ -1.64
HMGB1-208ENST00000490788 LORP23490 312 aaPredicted RBP4.79□□□□□ -1.64
HMGB1-208ENST00000490788 BRPF1P55201 1214 aaPredicted RBP4.79□□□□□ -1.64
HMGB1-208ENST00000490788 SLC6A16Q9GZN6 736 aa4.79□□□□□ -1.64
HMGB1-208ENST00000490788 MOXD2PA6NHM9 499 aa4.78□□□□□ -1.64
HMGB1-208ENST00000490788 TERTO14746 1132 aaKnown RBP4.78□□□□□ -1.64
HMGB1-208ENST00000490788 NDUFV2P19404 249 aa4.78□□□□□ -1.64
HMGB1-208ENST00000490788 RPIAP49247 311 aa4.78□□□□□ -1.64
HMGB1-208ENST00000490788 RIC3Q7Z5B4 369 aa4.78□□□□□ -1.64
HMGB1-208ENST00000490788 CRIPAKQ8N1N5 446 aa4.78□□□□□ -1.64
HMGB1-208ENST00000490788 FAM117AQ9C073 453 aa4.78□□□□□ -1.64
HMGB1-208ENST00000490788 SALL2Q9Y467 1007 aaPredicted RBP4.78□□□□□ -1.64
HMGB1-208ENST00000490788 NUTM2BA6NNL0 878 aaPredicted RBP4.77□□□□□ -1.65
HMGB1-208ENST00000490788 NUTM2EB1AL46 878 aaPredicted RBP4.77□□□□□ -1.65
HMGB1-208ENST00000490788 C11orf95C9JLR9 678 aaPredicted RBP4.77□□□□□ -1.65
HMGB1-208ENST00000490788 TNFRSF10AO00220 468 aa4.77□□□□□ -1.65
HMGB1-208ENST00000490788 GUCA2AQ02747 115 aa4.77□□□□□ -1.65
HMGB1-208ENST00000490788 CSPP1Q1MSJ5 1256 aa4.77□□□□□ -1.65
HMGB1-208ENST00000490788 NUTM2DQ5VT03 806 aaPredicted RBP4.77□□□□□ -1.65
HMGB1-208ENST00000490788 RSBN1LQ6PCB5 846 aaPredicted RBP4.77□□□□□ -1.65
HMGB1-208ENST00000490788 NUTM2AQ8IVF1 878 aaPredicted RBP4.77□□□□□ -1.65
HMGB1-208ENST00000490788 IL27Q8NEV9 243 aa4.77□□□□□ -1.65
HMGB1-208ENST00000490788 HLA-CQ95604 372 aa4.77□□□□□ -1.65
HMGB1-208ENST00000490788 POLR3EQ9NVU0 708 aa4.77□□□□□ -1.65
HMGB1-208ENST00000490788 SPDYE5A6NIY4 337 aa4.76□□□□□ -1.65
HMGB1-208ENST00000490788 CD2BP2O95400 341 aaKnown RBP4.76□□□□□ -1.65
HMGB1-208ENST00000490788 AVPP01185 164 aa4.76□□□□□ -1.65
HMGB1-208ENST00000490788 GJA5P36382 358 aa4.76□□□□□ -1.65
HMGB1-208ENST00000490788 CLK2P49760 499 aaKnown RBP4.76□□□□□ -1.65
HMGB1-208ENST00000490788 MTMR2Q13614 643 aa4.76□□□□□ -1.65
HMGB1-208ENST00000490788 MYSM1Q5VVJ2 828 aa4.76□□□□□ -1.65
HMGB1-208ENST00000490788 BRICD5Q6PL45 260 aa4.76□□□□□ -1.65
HMGB1-208ENST00000490788 USB1Q9BQ65 265 aaKnown RBP4.76□□□□□ -1.65
HMGB1-208ENST00000490788 KRTAP9-9Q9BYP9 154 aa4.76□□□□□ -1.65
HMGB1-208ENST00000490788 KRTAP9-4Q9BYQ2 154 aa4.76□□□□□ -1.65
HMGB1-208ENST00000490788 ZBTB3Q9H5J0 574 aa4.76□□□□□ -1.65
HMGB1-208ENST00000490788 PKD2L1Q9P0L9 805 aa4.76□□□□□ -1.65
HMGB1-208ENST00000490788 SPTLC1O15269 473 aa4.75□□□□□ -1.65
HMGB1-208ENST00000490788 ST8SIA5O15466 376 aa4.75□□□□□ -1.65
HMGB1-208ENST00000490788 CTC1Q2NKJ3 1217 aa4.75□□□□□ -1.65
HMGB1-208ENST00000490788 SH3D19Q5HYK7 790 aa4.75□□□□□ -1.65
HMGB1-208ENST00000490788 PLA2G2CQ5R387 149 aa4.75□□□□□ -1.65
HMGB1-208ENST00000490788 RNF19BQ6ZMZ0 732 aa4.75□□□□□ -1.65
HMGB1-208ENST00000490788 RETREG3Q86VR2 466 aa4.75□□□□□ -1.65
HMGB1-208ENST00000490788 TSC1Q92574 1164 aa4.75□□□□□ -1.65
HMGB1-208ENST00000490788 PCMTD1Q96MG8 357 aaPredicted RBP4.75□□□□□ -1.65
HMGB1-208ENST00000490788 SMCPP49901 116 aaPredicted RBP4.74□□□□□ -1.65
HMGB1-208ENST00000490788 SKIV2LQ15477 1246 aaKnown RBP4.74□□□□□ -1.65
HMGB1-208ENST00000490788 MSS51Q4VC12 460 aa4.74□□□□□ -1.65
HMGB1-208ENST00000490788 PRPF38BQ5VTL8 546 aaKnown RBP4.74□□□□□ -1.65
HMGB1-208ENST00000490788 SYMPKQ92797 1274 aaKnown RBP4.74□□□□□ -1.65
HMGB1-208ENST00000490788 THAP11Q96EK4 314 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms