RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 RBM33Q96EV2 1170 aaKnown RBP18.26■□□□□ 0.51
COL5A1-201ENST00000371817 CCDC192P0DO97 292 aa18.26■□□□□ 0.51
COL5A1-201ENST00000371817 TRDNQ13061 729 aa18.26■□□□□ 0.51
COL5A1-201ENST00000371817 BBXQ8WY36 941 aaPredicted RBP18.26■□□□□ 0.51
COL5A1-201ENST00000371817 LUC7LQ9NQ29 371 aaKnown RBP18.26■□□□□ 0.51
COL5A1-201ENST00000371817 ANKRD62A6NC57 917 aa18.26■□□□□ 0.51
COL5A1-201ENST00000371817 CCDC181Q5TID7 509 aa18.25■□□□□ 0.51
COL5A1-201ENST00000371817 TAX1BP1Q86VP1 789 aa18.25■□□□□ 0.51
COL5A1-201ENST00000371817 DNAJC2Q99543 621 aaKnown RBP18.25■□□□□ 0.51
COL5A1-201ENST00000371817 TMCO3Q6UWJ1 677 aa18.25■□□□□ 0.51
COL5A1-201ENST00000371817 FAM193AP78312 1265 aa18.25■□□□□ 0.51
COL5A1-201ENST00000371817 KAT6BQ8WYB5 2073 aa18.25■□□□□ 0.51
COL5A1-201ENST00000371817 TXLNBQ8N3L3 684 aa18.25■□□□□ 0.51
COL5A1-201ENST00000371817 GTF2A1P52655 376 aaPredicted RBP18.24■□□□□ 0.51
COL5A1-201ENST00000371817 ZNHIT6Q9NWK9 470 aaKnown RBP18.24■□□□□ 0.51
COL5A1-201ENST00000371817 ZHX1Q9UKY1 873 aaPredicted RBP18.24■□□□□ 0.51
COL5A1-201ENST00000371817 CHMP7Q8WUX9 453 aaPredicted RBP18.24■□□□□ 0.51
COL5A1-201ENST00000371817 GBP2P32456 591 aaPredicted RBP18.24■□□□□ 0.51
COL5A1-201ENST00000371817 COG6Q9Y2V7 657 aa18.24■□□□□ 0.51
COL5A1-201ENST00000371817 TIGD1Q96MW7 591 aa18.23■□□□□ 0.51
COL5A1-201ENST00000371817 SPATA24Q86W54 205 aa18.22■□□□□ 0.51
COL5A1-201ENST00000371817 CCAR1Q8IX12 1150 aaKnown RBP18.22■□□□□ 0.51
COL5A1-201ENST00000371817 PDCP20941 246 aa18.22■□□□□ 0.51
COL5A1-201ENST00000371817 ZSCAN30Q86W11 494 aa18.22■□□□□ 0.51
COL5A1-201ENST00000371817 PRPF40AO75400 957 aaKnown RBP18.22■□□□□ 0.51
COL5A1-201ENST00000371817 BCL2L13Q9BXK5 485 aa18.22■□□□□ 0.51
COL5A1-201ENST00000371817 SAFB2Q14151 953 aaKnown RBP eCLIP18.21■□□□□ 0.51
COL5A1-201ENST00000371817 MAGEC2Q9UBF1 373 aaPredicted RBP18.21■□□□□ 0.51
COL5A1-201ENST00000371817 UBXN4Q92575 508 aa18.21■□□□□ 0.51
COL5A1-201ENST00000371817 CRACR2AQ9BSW2 395 aa18.21■□□□□ 0.51
COL5A1-201ENST00000371817 MICALCLQ6ZW33 695 aa18.21■□□□□ 0.5
COL5A1-201ENST00000371817 MCM2P49736 904 aa18.2■□□□□ 0.5
COL5A1-201ENST00000371817 TRIM34Q9BYJ4 488 aa18.2■□□□□ 0.5
COL5A1-201ENST00000371817 AMOTL1Q8IY63 956 aa18.2■□□□□ 0.5
COL5A1-201ENST00000371817 CCDC43Q96MW1 224 aaKnown RBP18.2■□□□□ 0.5
COL5A1-201ENST00000371817 ERICH2A1L162 156 aa18.2■□□□□ 0.5
COL5A1-201ENST00000371817 TNNT1P13805 278 aa18.2■□□□□ 0.5
COL5A1-201ENST00000371817 NFXL1Q6ZNB6 911 aa18.19■□□□□ 0.5
COL5A1-201ENST00000371817 MAP9Q49MG5 647 aa18.19■□□□□ 0.5
COL5A1-201ENST00000371817 GBP3Q9H0R5 595 aa18.19■□□□□ 0.5
COL5A1-201ENST00000371817 AAMPQ13685 434 aa18.19■□□□□ 0.5
COL5A1-201ENST00000371817 FAM177A1Q8N128 213 aaPredicted RBP18.19■□□□□ 0.5
COL5A1-201ENST00000371817 FMNL2Q96PY5 1086 aa18.19■□□□□ 0.5
COL5A1-201ENST00000371817 SERPINC1P01008 464 aa18.19■□□□□ 0.5
COL5A1-201ENST00000371817 MAP2K1Q02750 393 aaPredicted RBP18.19■□□□□ 0.5
COL5A1-201ENST00000371817 LRRFIP2Q9Y608 721 aaKnown RBP18.19■□□□□ 0.5
COL5A1-201ENST00000371817 PIP4K2AP48426 406 aaPredicted RBP18.18■□□□□ 0.5
COL5A1-201ENST00000371817 PPFIBP1Q86W92 1011 aa18.18■□□□□ 0.5
COL5A1-201ENST00000371817 BRMS1Q9HCU9 246 aa18.18■□□□□ 0.5
COL5A1-201ENST00000371817 LUZP1Q86V48 1076 aa18.18■□□□□ 0.5
COL5A1-201ENST00000371817 KIF2AO00139 706 aaPredicted RBP18.18■□□□□ 0.5
COL5A1-201ENST00000371817 RB1CC1Q8TDY2 1594 aa18.18■□□□□ 0.5
COL5A1-201ENST00000371817 G3V3G9 751 aa18.18■□□□□ 0.5
COL5A1-201ENST00000371817 BRPF1P55201 1214 aaPredicted RBP18.18■□□□□ 0.5
COL5A1-201ENST00000371817 DCAF8Q5TAQ9 597 aa18.18■□□□□ 0.5
COL5A1-201ENST00000371817 FOSBP53539 338 aa18.17■□□□□ 0.5
COL5A1-201ENST00000371817 RAB3GAP2Q9H2M9 1393 aa18.17■□□□□ 0.5
COL5A1-201ENST00000371817 CFAP45Q9UL16 551 aa18.17■□□□□ 0.5
COL5A1-201ENST00000371817 BAZ1BQ9UIG0 1483 aaKnown RBP18.16■□□□□ 0.5
COL5A1-201ENST00000371817 MNAT1P51948 309 aa18.16■□□□□ 0.5
COL5A1-201ENST00000371817 CCDC9Q9Y3X0 531 aaKnown RBP18.16■□□□□ 0.5
COL5A1-201ENST00000371817 MCM3P25205 808 aa18.16■□□□□ 0.5
COL5A1-201ENST00000371817 HDGFP51858 240 aaKnown RBP18.16■□□□□ 0.5
COL5A1-201ENST00000371817 CCDC27Q2M243 656 aa18.16■□□□□ 0.5
COL5A1-201ENST00000371817 PSMA5P28066 241 aa18.15■□□□□ 0.5
COL5A1-201ENST00000371817 SYCP1Q15431 976 aa18.15■□□□□ 0.5
COL5A1-201ENST00000371817 IFIT2P09913 472 aaKnown RBP18.15■□□□□ 0.5
COL5A1-201ENST00000371817 CEP63Q96MT8 703 aa18.15■□□□□ 0.5
COL5A1-201ENST00000371817 XBP1P17861 261 aa18.14■□□□□ 0.5
COL5A1-201ENST00000371817 CCDC91Q7Z6B0 441 aa18.14■□□□□ 0.5
COL5A1-201ENST00000371817 NINLQ9Y2I6 1382 aa18.14■□□□□ 0.49
COL5A1-201ENST00000371817 CNKSR2Q8WXI2 1034 aa18.14■□□□□ 0.49
COL5A1-201ENST00000371817 TNMDQ9H2S6 317 aa18.14■□□□□ 0.49
COL5A1-201ENST00000371817 TERF2IPQ9NYB0 399 aa18.14■□□□□ 0.49
COL5A1-201ENST00000371817 CWC22Q9HCG8 908 aaKnown RBP18.14■□□□□ 0.49
COL5A1-201ENST00000371817 CBFA2T2O43439 604 aa18.13■□□□□ 0.49
COL5A1-201ENST00000371817 KIF27Q86VH2 1401 aa18.13■□□□□ 0.49
COL5A1-201ENST00000371817 IBSPP21815 317 aaPredicted RBP18.13■□□□□ 0.49
COL5A1-201ENST00000371817 DZIP1LQ8IYY4 767 aaKnown RBP18.13■□□□□ 0.49
COL5A1-201ENST00000371817 DNAAF4Q8WXU2 420 aa18.13■□□□□ 0.49
COL5A1-201ENST00000371817 TRERF1Q96PN7 1200 aa18.13■□□□□ 0.49
COL5A1-201ENST00000371817 ZNF526Q8TF50 670 aaPredicted RBP18.12■□□□□ 0.49
COL5A1-201ENST00000371817 RRP7AQ9Y3A4 280 aaKnown RBP18.12■□□□□ 0.49
COL5A1-201ENST00000371817 KIF18AQ8NI77 898 aa18.12■□□□□ 0.49
COL5A1-201ENST00000371817 CDC45O75419 566 aa18.12■□□□□ 0.49
COL5A1-201ENST00000371817 KRI1Q8N9T8 703 aaKnown RBP18.12■□□□□ 0.49
COL5A1-201ENST00000371817 FIBPO43427 364 aa18.11■□□□□ 0.49
COL5A1-201ENST00000371817 ZNF396Q96N95 335 aaPredicted RBP18.11■□□□□ 0.49
COL5A1-201ENST00000371817 TXLNAP40222 546 aa18.11■□□□□ 0.49
COL5A1-201ENST00000371817 ERC2O15083 957 aa18.11■□□□□ 0.49
COL5A1-201ENST00000371817 PAK3O75914 559 aaPredicted RBP18.11■□□□□ 0.49
COL5A1-201ENST00000371817 PPP4R3BQ5MIZ7 849 aa18.11■□□□□ 0.49
COL5A1-201ENST00000371817 RALYLQ86SE5 291 aaKnown RBP18.11■□□□□ 0.49
COL5A1-201ENST00000371817 DACH1Q9UI36 760 aa18.11■□□□□ 0.49
COL5A1-201ENST00000371817 SSR1P43307 286 aaKnown RBP18.1■□□□□ 0.49
COL5A1-201ENST00000371817 DYNC1I1O14576 645 aa18.1■□□□□ 0.49
COL5A1-201ENST00000371817 C9orf78Q9NZ63 289 aaPredicted RBP18.1■□□□□ 0.49
COL5A1-201ENST00000371817 NOL10Q9BSC4 688 aaKnown RBP18.1■□□□□ 0.49
COL5A1-201ENST00000371817 LNPKQ9C0E8 428 aa18.1■□□□□ 0.49
COL5A1-201ENST00000371817 PPM1EQ8WY54 764 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms