RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ARHGEF38Q9NXL2 777 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 MEI4A8MW99 385 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 TRDMT1O14717 391 aaKnown RBP19.98■□□□□ 0.79
USP48-201ENST00000308271 GFAPP14136 432 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 ANPEPP15144 967 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 FMO1Q01740 532 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 NPY5RQ15761 445 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 TCHHL1Q5QJ38 904 aaPredicted RBP19.98■□□□□ 0.79
USP48-201ENST00000308271 N4BP2L1Q5TBK1 243 aaPredicted RBP19.98■□□□□ 0.79
USP48-201ENST00000308271 LRRC38Q5VT99 294 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 ADCK1Q86TW2 530 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 SEPT1Q8WYJ6 367 aa19.98■□□□□ 0.79
USP48-201ENST00000308271 PPARGP37231 505 aaPredicted RBP19.97■□□□□ 0.79
USP48-201ENST00000308271 DCTN2Q13561 401 aaKnown RBP19.97■□□□□ 0.79
USP48-201ENST00000308271 LBRQ14739 615 aaKnown RBP19.97■□□□□ 0.79
USP48-201ENST00000308271 ATF7IP2Q5U623 682 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 NUP93Q8N1F7 819 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 DAB1O75553 588 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 ALBP02768 609 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 IL1R1P14778 569 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 DLG4P78352 724 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 IER5Q5VY09 327 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 KYAT3Q6YP21 454 aaKnown RBP19.97■□□□□ 0.79
USP48-201ENST00000308271 KIAA2013Q8IYS2 634 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 CCDC33Q8N5R6 958 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 RIN3Q8TB24 985 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 SPIRE2Q8WWL2 714 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 CCDC28BQ9BUN5 200 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 EEF2KO00418 725 aaKnown RBP19.97■□□□□ 0.79
USP48-201ENST00000308271 TBC1D4O60343 1298 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 PROCP04070 461 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 TGM2P21980 687 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 PSMA4P25789 261 aaKnown RBP19.97■□□□□ 0.79
USP48-201ENST00000308271 NAMPTP43490 491 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 ZBTB49Q6ZSB9 765 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 FRA10AC1Q70Z53 315 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 CDR2LQ86X02 465 aaPredicted RBP19.97■□□□□ 0.79
USP48-201ENST00000308271 PYDC1Q8WXC3 89 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 TEX13BQ9BXU2 312 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 PLEKHA5Q9HAU0 1116 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 MAP3K20Q9NYL2 800 aaKnown RBP19.97■□□□□ 0.79
USP48-201ENST00000308271 FAM237BA0A1B0GVD1 139 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 M0R3G1 203 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 TGFB1I1O43294 461 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 ACADSBP45954 432 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 CHN2P52757 468 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 TMTC4Q5T4D3 741 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 NAPEPLDQ6IQ20 393 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 C3orf67Q6ZVT6 689 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 MAB21L3Q8N8X9 362 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 IFT43Q96FT9 208 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 PRPF18Q99633 342 aaKnown RBP19.97■□□□□ 0.79
USP48-201ENST00000308271 GORASP1Q9BQQ3 440 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 LRRC40Q9H9A6 602 aa19.97■□□□□ 0.79
USP48-201ENST00000308271 CAMSAP3Q9P1Y5 1249 aaPredicted RBP19.97■□□□□ 0.79
USP48-201ENST00000308271 ECM1Q16610 540 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 ALLCQ8N6M5 410 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 EMC1Q8N766 993 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 STKLD1Q8NE28 680 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 RMDN2Q96LZ7 410 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 ECSITQ9BQ95 431 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 MTMR12Q9C0I1 747 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 ACSS3Q9H6R3 686 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 ALOX15BO15296 676 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 MAP3K6O95382 1288 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 GH1P01241 217 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 CYP2C8P10632 490 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 PPATQ06203 517 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 MGAT5Q09328 741 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 C4orf50Q6ZRC1 276 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 RIPOR1Q6ZS17 1223 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 CLNKQ7Z7G1 428 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 DPP9Q86TI2 863 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 OR6Y1Q8NGX8 325 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 LRRC39Q96DD0 335 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 SCHIP1Q9P0W5 487 aaPredicted RBP19.96■□□□□ 0.79
USP48-201ENST00000308271 KIAA1257Q9ULG3 409 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 ADARP55265 1226 aaKnown RBP19.96■□□□□ 0.79
USP48-201ENST00000308271 KCTD19Q17RG1 926 aaPredicted RBP19.96■□□□□ 0.79
USP48-201ENST00000308271 SLC30A10Q6XR72 485 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 DENND5BQ6ZUT9 1274 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 CALML6Q8TD86 181 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 PWWP2AQ96N64 755 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 ASPSCR1Q9BZE9 553 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 ACP6Q9NPH0 428 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 FBXO28Q9NVF7 368 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 TNS2Q63HR2 1409 aa19.96■□□□□ 0.79
USP48-201ENST00000308271 CCDC78A2IDD5 438 aa19.95■□□□□ 0.78
USP48-201ENST00000308271 PRPF4O43172 522 aaKnown RBP eCLIP19.95■□□□□ 0.78
USP48-201ENST00000308271 GJB6O95452 261 aa19.95■□□□□ 0.78
USP48-201ENST00000308271 VDRP11473 427 aa19.95■□□□□ 0.78
USP48-201ENST00000308271 ITGA9Q13797 1035 aa19.95■□□□□ 0.78
USP48-201ENST00000308271 ZBTB41Q5SVQ8 909 aa19.95■□□□□ 0.78
USP48-201ENST00000308271 LRRC8BQ6P9F7 803 aa19.95■□□□□ 0.78
USP48-201ENST00000308271 ARHGEF3Q9NR81 526 aa19.95■□□□□ 0.78
USP48-201ENST00000308271 APOC4-APOC2K7ER74 178 aa19.95■□□□□ 0.78
USP48-201ENST00000308271 APOC2P02655 101 aa19.95■□□□□ 0.78
USP48-201ENST00000308271 ARSHQ5FYA8 562 aa19.95■□□□□ 0.78
USP48-201ENST00000308271 KRT27Q7Z3Y8 459 aa19.95■□□□□ 0.78
USP48-201ENST00000308271 DHDDSQ86SQ9 333 aa19.95■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms