RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 A0A0A0MRY4 1105 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 TBC1D3BA6NDS4 549 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 SEC24BO95487 1268 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 GAP43P17677 238 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 GARTP22102 1010 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 BDNFP23560 247 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 ITPKAP23677 461 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 SOWAHAQ2M3V2 549 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 SFR1Q86XK3 245 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 NOC3LQ8WTT2 800 aaKnown RBP18.06■□□□□ 0.48
VPS29-204ENST00000548259 MYLPFQ96A32 169 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 OTUB2Q96DC9 234 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 SAAL1Q96ER3 474 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 SMPD4Q9NXE4 827 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 CFAP97Q9P2B7 532 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 MBD1Q9UIS9 605 aaPredicted RBP18.06■□□□□ 0.48
VPS29-204ENST00000548259 PCDHB9Q9Y5E1 797 aa18.06■□□□□ 0.48
VPS29-204ENST00000548259 DSPP15924 2871 aaKnown RBP18.06■□□□□ 0.48
VPS29-204ENST00000548259 ATXN2Q99700 1313 aaKnown RBP18.05■□□□□ 0.48
VPS29-204ENST00000548259 THADAQ6YHU6 1953 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 FAM221BA6H8Z2 402 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 ZNF840PA6NDX5 716 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 ZNF217O75362 1048 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 GCNT3O95395 438 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 TNNC2P02585 160 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 NEFLP07196 543 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 SLC6A11P48066 632 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 NOP14P78316 857 aaKnown RBP18.05■□□□□ 0.48
VPS29-204ENST00000548259 GAD2Q05329 585 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 SLC14A1Q13336 389 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 ALCAMQ13740 583 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 SURF1Q15526 300 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 GAB4Q2WGN9 574 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 L1TD1Q5T7N2 865 aaKnown RBP18.05■□□□□ 0.48
VPS29-204ENST00000548259 SDE2Q6IQ49 451 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 OSTM1Q86WC4 334 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 CHCHD4Q8N4Q1 142 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 HPDLQ96IR7 371 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 TTLL2Q9BWV7 592 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 MTMR12Q9C0I1 747 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 CCDC39Q9UFE4 941 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 NUP205Q92621 2012 aa18.05■□□□□ 0.48
VPS29-204ENST00000548259 E2F8A0AVK6 867 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 ARHGAP33O14559 1287 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 MBL2P11226 248 aaPredicted RBP18.04■□□□□ 0.48
VPS29-204ENST00000548259 HNRNPLP14866 589 aaKnown RBP eCLIP18.04■□□□□ 0.48
VPS29-204ENST00000548259 KIR2DL1P43626 348 aaPredicted RBP18.04■□□□□ 0.48
VPS29-204ENST00000548259 PSMC1P62191 440 aaKnown RBP18.04■□□□□ 0.48
VPS29-204ENST00000548259 KDSRQ06136 332 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 ZNF33AQ06730 810 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 RHBDF2Q6PJF5 856 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 DYMQ7RTS9 669 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 PROSER1Q86XN7 944 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 MINDY1Q8N5J2 469 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 ZNF513Q8N8E2 541 aaPredicted RBP18.04■□□□□ 0.48
VPS29-204ENST00000548259 PDZD8Q8NEN9 1154 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 MMS19Q96T76 1030 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 SNX25Q9H3E2 840 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 FAM124BQ9H5Z6 455 aaPredicted RBP18.04■□□□□ 0.48
VPS29-204ENST00000548259 DEC1Q9P2X7 70 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 STK17AQ9UEE5 414 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 SUSD2Q9UGT4 822 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 AKAP13Q12802 2813 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 DENND4CQ5VZ89 1909 aa18.04■□□□□ 0.48
VPS29-204ENST00000548259 TAF4O00268 1085 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 KIAA0391O15091 583 aaKnown RBP18.03■□□□□ 0.48
VPS29-204ENST00000548259 ATP2C2O75185 946 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 PPP1R37O75864 691 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 OLFM2O95897 454 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 GNSP15586 552 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 TXLNAP40222 546 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 ZXDBP98169 803 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 DUOXA2Q1HG44 320 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 SYCP2LQ5T4T6 812 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 EMC10Q5UCC4 262 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 HS2ST1Q7LGA3 356 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 FRMD1Q8N878 549 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 MYCBPAPQ8TBZ2 947 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 C8orf48Q96LL4 319 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 RNF38Q9H0F5 515 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 CAPN10Q9HC96 672 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 PDE11AQ9HCR9 933 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 SH3BP1Q9Y3L3 701 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 DMXL2Q8TDJ6 3036 aa18.03■□□□□ 0.48
VPS29-204ENST00000548259 TCHHQ07283 1943 aa18.02■□□□□ 0.48
VPS29-204ENST00000548259 A0A1W2PQD8 194 aa18.02■□□□□ 0.48
VPS29-204ENST00000548259 ADAM23O75077 832 aa18.02■□□□□ 0.48
VPS29-204ENST00000548259 OAS1P00973 400 aaKnown RBP18.02■□□□□ 0.48
VPS29-204ENST00000548259 PDGFRBP09619 1106 aa18.02■□□□□ 0.48
VPS29-204ENST00000548259 HOXB2P14652 356 aa18.02■□□□□ 0.48
VPS29-204ENST00000548259 WARSP23381 471 aaKnown RBP18.02■□□□□ 0.48
VPS29-204ENST00000548259 USP46P62068 366 aa18.02■□□□□ 0.48
VPS29-204ENST00000548259 TAF10Q12962 218 aa18.02■□□□□ 0.48
VPS29-204ENST00000548259 CCDC142Q17RM4 750 aa18.02■□□□□ 0.48
VPS29-204ENST00000548259 LY6G5CQ5SRR4 150 aa18.02■□□□□ 0.48
VPS29-204ENST00000548259 SV2BQ7L1I2 683 aa18.02■□□□□ 0.48
VPS29-204ENST00000548259 RAB44Q7Z6P3 723 aaPredicted RBP18.02■□□□□ 0.48
VPS29-204ENST00000548259 PCED1BQ96HM7 432 aa18.02■□□□□ 0.48
VPS29-204ENST00000548259 ELOVL4Q9GZR5 314 aa18.02■□□□□ 0.48
VPS29-204ENST00000548259 IKZF4Q9H2S9 585 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms