RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SNAPC2Q13487 334 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 DAG1Q14118 895 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 RAB39AQ14964 217 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 PUM3Q15397 648 aaKnown RBP4.87□□□□□ -1.63
VPS29-202ENST00000447578 ARL13BQ3SXY8 428 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 KHDC1LQ5JSQ8 128 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 TSTD2Q5T7W7 516 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 TLDC1Q6P9B6 456 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 MMS22LQ6ZRQ5 1243 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 ZNF527Q8NB42 609 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 DPF1Q92782 380 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 TMEM41AQ96HV5 264 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 SUCLG2Q96I99 432 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 FBXL20Q96IG2 436 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 MRGPRX4Q96LA9 322 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 TIMP4Q99727 224 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 AGO4Q9HCK5 861 aaKnown RBP4.87□□□□□ -1.63
VPS29-202ENST00000447578 PIH1D1Q9NWS0 290 aaKnown RBP4.87□□□□□ -1.63
VPS29-202ENST00000447578 CAMSAP3Q9P1Y5 1249 aaPredicted RBP4.87□□□□□ -1.63
VPS29-202ENST00000447578 ZNF69Q9UC07 566 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 FEZ2Q9UHY8 353 aaPredicted RBP4.87□□□□□ -1.63
VPS29-202ENST00000447578 PCDHA6Q9UN73 950 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 ENTPD2Q9Y5L3 495 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 ZNF644Q9H582 1327 aaPredicted RBP4.87□□□□□ -1.63
VPS29-202ENST00000447578 SETD1BQ9UPS6 1966 aaKnown RBP4.87□□□□□ -1.63
VPS29-202ENST00000447578 ABCC5O15440 1437 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 DAPK1P53355 1430 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 CEP170Q5SW79 1584 aa4.87□□□□□ -1.63
VPS29-202ENST00000447578 RAPGEF6Q8TEU7 1601 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 WDR91A4D1P6 747 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 F8W8V4 182 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 SBK3P0C264 359 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 HSD3B1P14060 373 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 CREMQ03060 361 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 GRM1Q13255 1194 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 STARD3Q14849 445 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 MAPRE1Q15691 268 aaKnown RBP4.86□□□□□ -1.63
VPS29-202ENST00000447578 SLC4A8Q2Y0W8 1093 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 CD300EQ496F6 205 aaPredicted RBP4.86□□□□□ -1.63
VPS29-202ENST00000447578 FLYWCH1Q4VC44 716 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 KLHDC7AQ5VTJ3 777 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 CLEC4GQ6UXB4 293 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 MICALCLQ6ZW33 695 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 C1QL2Q7Z5L3 287 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 GRASPQ7Z6J2 395 aaPredicted RBP4.86□□□□□ -1.63
VPS29-202ENST00000447578 AMIGO2Q86SJ2 522 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 SESTD1Q86VW0 696 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 DCBLD1Q8N8Z6 715 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 LPIN2Q92539 896 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 WDCPQ9H6R7 721 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 TROQ12816 1431 aaPredicted RBP4.86□□□□□ -1.63
VPS29-202ENST00000447578 PRG4Q92954 1404 aaPredicted RBP4.86□□□□□ -1.63
VPS29-202ENST00000447578 PLB1Q6P1J6 1458 aa4.86□□□□□ -1.63
VPS29-202ENST00000447578 A0A1W2PS29 197 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 ADM5C9JUS6 153 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 MPPED1O15442 326 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 FFAR2O15552 330 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 AGFG2O95081 481 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 THP07101 528 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 FTH1P19P0C7X4 201 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 SRGNP10124 158 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 HARSP12081 509 aaKnown RBP4.85□□□□□ -1.63
VPS29-202ENST00000447578 NPR1P16066 1061 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 TSHRP16473 764 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 GPD1P21695 349 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 GRIA3P42263 894 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 MAPK9P45984 424 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 HSPA7P48741 367 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 TLE1Q04724 770 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 FPGSQ05932 587 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 BLMHQ13867 455 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 DACT2Q5SW24 774 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 LCE1AQ5T7P2 110 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 CLASRPQ8N2M8 674 aaKnown RBP4.85□□□□□ -1.63
VPS29-202ENST00000447578 TXLNBQ8N3L3 684 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 RNF152Q8N8N0 203 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 ATP11CQ8NB49 1132 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 NSUN7Q8NE18 718 aaKnown RBP4.85□□□□□ -1.63
VPS29-202ENST00000447578 TOR1AIP2Q8NFQ8 470 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 IFI44Q8TCB0 444 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 BRIX1Q8TDN6 353 aaKnown RBP4.85□□□□□ -1.63
VPS29-202ENST00000447578 ZNF566Q969W8 418 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 SARAFQ96BY9 339 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 TBC1D20Q96BZ9 403 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 LTV1Q96GA3 475 aaPredicted RBP4.85□□□□□ -1.63
VPS29-202ENST00000447578 ZC3H10Q96K80 434 aaKnown RBP4.85□□□□□ -1.63
VPS29-202ENST00000447578 PAGR1Q9BTK6 254 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 ISCA1Q9BUE6 129 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 COLEC11Q9BWP8 271 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 TTLL2Q9BWV7 592 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 C1QTNF7Q9BXJ2 289 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 C11orf54Q9H0W9 315 aaPredicted RBP4.85□□□□□ -1.63
VPS29-202ENST00000447578 AS3MTQ9HBK9 375 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 SACM1LQ9NTJ5 587 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 INTS13Q9NVM9 706 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 CFDP1Q9UEE9 299 aaPredicted RBP4.85□□□□□ -1.63
VPS29-202ENST00000447578 ST3GAL5Q9UNP4 418 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 CDYLQ9Y232 598 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 ROCK1Q13464 1354 aa4.85□□□□□ -1.63
VPS29-202ENST00000447578 NUP160Q12769 1436 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms