RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeastyeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USA1YML029W YGL118CP53132 145 aa2.86□□□□□ -1.95
USA1YML029W YPL257WQ08974 193 aa2.86□□□□□ -1.95
USA1YML029W YPR053CQ6Q5F3 151 aa2.86□□□□□ -1.95
USA1YML029W RPL16BP26785 198 aaKnown RBP2.85□□□□□ -1.95
USA1YML029W RRT13P40042 185 aa2.85□□□□□ -1.95
USA1YML029W YER134CP40081 178 aa2.85□□□□□ -1.95
USA1YML029W OST3P48439 350 aa2.85□□□□□ -1.95
USA1YML029W YBR121C-AP0C5L4 52 aa2.85□□□□□ -1.95
USA1YML029W RPL18AP0CX49 186 aaKnown RBP2.85□□□□□ -1.95
USA1YML029W RPL18BP0CX50 186 aaKnown RBP2.85□□□□□ -1.95
USA1YML029W YCR023CP25351 611 aa2.85□□□□□ -1.95
USA1YML029W SCM4P32564 187 aa2.85□□□□□ -1.95
USA1YML029W PET8P38921 284 aa2.85□□□□□ -1.95
USA1YML029W YNL200CP40165 246 aaKnown RBP2.85□□□□□ -1.95
USA1YML029W HAL1Q01766 294 aa2.85□□□□□ -1.95
USA1YML029W TVP18Q04767 167 aa2.85□□□□□ -1.95
USA1YML029W COA6Q3E846 104 aa2.85□□□□□ -1.95
USA1YML029W TPT1Q12272 230 aaKnown RBP2.84□□□□□ -1.95
USA1YML029W YBL112CQ3E7Y4 105 aa2.84□□□□□ -1.95
USA1YML029W HTL1Q9URQ5 78 aa2.84□□□□□ -1.95
USA1YML029W PFY1P07274 126 aa2.84□□□□□ -1.96
USA1YML029W YAR029WP39549 74 aa2.84□□□□□ -1.96
USA1YML029W PMP3P87284 55 aa2.84□□□□□ -1.96
USA1YML029W YIL134C-AQ45U18 67 aa2.84□□□□□ -1.96
USA1YML029W NRG2P38082 220 aa2.83□□□□□ -1.96
USA1YML029W SAE3P89114 91 aa2.83□□□□□ -1.96
USA1YML029W YIL014C-AQ02598 104 aa2.83□□□□□ -1.96
USA1YML029W MGR2Q02889 113 aa2.83□□□□□ -1.96
USA1YML029W RDS3Q06835 107 aaPredicted RBP2.83□□□□□ -1.96
USA1YML029W CRC1Q12289 327 aa2.83□□□□□ -1.96
USA1YML029W SAL1D6W196 494 aa2.83□□□□□ -1.96
USA1YML029W MRPL11P36521 249 aaPredicted RBP2.83□□□□□ -1.96
USA1YML029W YER076CP40049 302 aa2.83□□□□□ -1.96
USA1YML029W YJL028WP47062 111 aa2.83□□□□□ -1.96
USA1YML029W UBC5P15732 148 aa2.82□□□□□ -1.96
USA1YML029W YKR070WP36151 352 aaKnown RBP2.82□□□□□ -1.96
USA1YML029W RPF1P38805 295 aaKnown RBP2.82□□□□□ -1.96
USA1YML029W KRE9P39005 276 aa2.82□□□□□ -1.96
USA1YML029W YNL217WP40152 326 aa2.82□□□□□ -1.96
USA1YML029W TOS6P48560 102 aa2.82□□□□□ -1.96
USA1YML029W YMR122W-AQ3E842 84 aa2.82□□□□□ -1.96
USA1YML029W YPL229WQ99395 206 aa2.82□□□□□ -1.96
USA1YML029W PAU16P35994 123 aa2.82□□□□□ -1.96
USA1YML029W ATP23P53722 227 aa2.82□□□□□ -1.96
USA1YML029W TRP1P00912 224 aa2.81□□□□□ -1.96
USA1YML029W AQY1P0CD91 305 aa2.81□□□□□ -1.96
USA1YML029W PRE1P22141 198 aaKnown RBP2.81□□□□□ -1.96
USA1YML029W YCR001WP25347 104 aa2.81□□□□□ -1.96
USA1YML029W YRA2P36036 203 aaKnown RBP RIP-Chip data2.81□□□□□ -1.96not detected
USA1YML029W DCV1P43595 202 aa2.81□□□□□ -1.96
USA1YML029W POP3P53833 195 aaPredicted RBP2.81□□□□□ -1.96
USA1YML029W FCF1Q05498 189 aaPredicted RBP2.81□□□□□ -1.96
USA1YML029W ARO2P28777 376 aaKnown RBP2.81□□□□□ -1.96
USA1YML029W YDR042CQ03205 200 aa2.81□□□□□ -1.96
USA1YML029W CNL1Q06333 122 aa2.81□□□□□ -1.96
USA1YML029W ERV14P53173 138 aa2.8□□□□□ -1.96
USA1YML029W DGA1Q08650 418 aa2.8□□□□□ -1.96
USA1YML029W YPT53P36019 220 aa2.8□□□□□ -1.96
USA1YML029W YBL081WP38180 368 aaKnown RBP2.8□□□□□ -1.96
USA1YML029W HAC1P41546 238 aa2.8□□□□□ -1.96
USA1YML029W RTC6O14464 93 aa2.79□□□□□ -1.96
USA1YML029W RPL33AP05744 107 aaKnown RBP2.79□□□□□ -1.96
USA1YML029W RPS28BP0C0X0 67 aaKnown RBP2.79□□□□□ -1.96
USA1YML029W FUN14P18411 198 aa2.79□□□□□ -1.96
USA1YML029W RPL33BP41056 107 aaKnown RBP2.79□□□□□ -1.96
USA1YML029W YOR008C-AQ3E7B9 74 aa2.79□□□□□ -1.96
USA1YML029W RPS28AQ3E7X9 67 aaPredicted RBP2.79□□□□□ -1.96
USA1YML029W RPR2P40571 144 aa2.79□□□□□ -1.96
USA1YML029W PKR1Q03880 122 aaKnown RBP2.79□□□□□ -1.96
USA1YML029W YLR050CQ12155 161 aaKnown RBP2.79□□□□□ -1.96
USA1YML029W FYV4P38783 130 aaPredicted RBP2.78□□□□□ -1.96
USA1YML029W ARC15P40518 154 aaRIP-Chip data2.78□□□□□ -1.96not detected
USA1YML029W YJR146WP47174 117 aa2.78□□□□□ -1.96
USA1YML029W YLR112WQ12130 139 aa2.78□□□□□ -1.96
USA1YML029W HMRA2P0CY13 119 aa2.78□□□□□ -1.96
USA1YML029W RPL16AP26784 199 aaKnown RBP2.78□□□□□ -1.96
USA1YML029W APS1P35181 156 aa2.78□□□□□ -1.96
USA1YML029W SLO1Q3E784 85 aa2.78□□□□□ -1.96
USA1YML029W COA3Q3E7B2 85 aa2.78□□□□□ -1.96
USA1YML029W SEC11P15367 167 aa2.77□□□□□ -1.97
USA1YML029W ABF2Q02486 183 aa2.77□□□□□ -1.97
USA1YML029W YMR103CQ04436 120 aa2.77□□□□□ -1.97
USA1YML029W YER039C-AP0CD97 72 aa2.77□□□□□ -1.97
USA1YML029W YGL230CP53074 147 aa2.77□□□□□ -1.97
USA1YML029W YDL241WQ07738 123 aa2.77□□□□□ -1.97
USA1YML029W SCS22Q6Q595 175 aa2.77□□□□□ -1.97
USA1YML029W MRPL44P19956 98 aa2.76□□□□□ -1.97
USA1YML029W BET5Q03630 159 aa2.76□□□□□ -1.97
USA1YML029W YDL157CQ12082 118 aa2.76□□□□□ -1.97
USA1YML029W ENV10Q99382 181 aa2.76□□□□□ -1.97
USA1YML029W YCR007CP25354 239 aa2.76□□□□□ -1.97
USA1YML029W YBR209WP38311 105 aa2.76□□□□□ -1.97
USA1YML029W NAT5Q08689 176 aa2.76□□□□□ -1.97
USA1YML029W ATP5P09457 212 aa2.75□□□□□ -1.97
USA1YML029W CDC43P18898 376 aa2.75□□□□□ -1.97
USA1YML029W RPC10P40422 70 aa2.75□□□□□ -1.97
USA1YML029W YIL059CP40520 121 aa2.75□□□□□ -1.97
USA1YML029W MSL1P40567 111 aaPredicted RBP2.75□□□□□ -1.97
USA1YML029W YGL088WP53151 121 aa2.75□□□□□ -1.97
USA1YML029W YMR175W-AQ3E766 64 aa2.75□□□□□ -1.97
Retrieved 100 of 5,963 RNA–protein pairs in 26 ms