RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W PAU7P39545 55 aa3.31□□□□□ -1.88
VPS29YHR012W YER134CP40081 178 aa3.31□□□□□ -1.88
VPS29YHR012W LCL1Q02786 101 aa3.31□□□□□ -1.88
VPS29YHR012W GPI19Q04082 140 aa3.31□□□□□ -1.88
VPS29YHR012W POM33Q12164 279 aa3.31□□□□□ -1.88
VPS29YHR012W RPP2AP05319 106 aaKnown RBP3.3□□□□□ -1.88
VPS29YHR012W RPL23AP0CX41 137 aaKnown RBP3.3□□□□□ -1.88
VPS29YHR012W RPL23BP0CX42 137 aaKnown RBP3.3□□□□□ -1.88
VPS29YHR012W RPL16AP26784 199 aaKnown RBP3.3□□□□□ -1.88
VPS29YHR012W URM1P40554 99 aaPredicted RBP3.3□□□□□ -1.88
VPS29YHR012W YGL118CP53132 145 aa3.3□□□□□ -1.88
VPS29YHR012W THG1P53215 237 aaKnown RBP3.3□□□□□ -1.88
VPS29YHR012W WIP1Q2V2P8 89 aa3.3□□□□□ -1.88
VPS29YHR012W GSP1P32835 219 aaKnown RBP3.29□□□□□ -1.88
VPS29YHR012W GSP2P32836 220 aaKnown RBP3.29□□□□□ -1.88
VPS29YHR012W SEC72P39742 193 aaKnown RBP3.29□□□□□ -1.88
VPS29YHR012W YFL067WP43537 175 aa3.29□□□□□ -1.88
VPS29YHR012W GTO3Q04806 366 aa3.29□□□□□ -1.88
VPS29YHR012W FSF1Q12029 327 aaKnown RBP3.29□□□□□ -1.88
VPS29YHR012W YDR029WQ12111 104 aa3.29□□□□□ -1.88
VPS29YHR012W PAU16P35994 123 aa3.28□□□□□ -1.88
VPS29YHR012W ARC18Q05933 178 aaKnown RBP3.28□□□□□ -1.88
VPS29YHR012W FYV7Q12247 151 aa3.28□□□□□ -1.88
VPS29YHR012W ATP5P09457 212 aa3.27□□□□□ -1.89
VPS29YHR012W YJL197C-AP0C5P0 93 aa3.27□□□□□ -1.89
VPS29YHR012W YIL059CP40520 121 aa3.27□□□□□ -1.89
VPS29YHR012W DCV1P43595 202 aa3.27□□□□□ -1.89
VPS29YHR012W CNL1Q06333 122 aa3.27□□□□□ -1.89
VPS29YHR012W TPT1Q12272 230 aaKnown RBP3.27□□□□□ -1.89
VPS29YHR012W ENV10Q99382 181 aa3.27□□□□□ -1.89
VPS29YHR012W YKR070WP36151 352 aaKnown RBP3.26□□□□□ -1.89
VPS29YHR012W SNA2P56508 79 aa3.26□□□□□ -1.89
VPS29YHR012W MHR1Q06630 226 aa3.26□□□□□ -1.89
VPS29YHR012W YDL085C-AQ3E7B7 68 aaKnown RBP3.26□□□□□ -1.89
VPS29YHR012W YLR307C-AQ3E825 87 aa3.26□□□□□ -1.89
VPS29YHR012W YER076CP40049 302 aa3.25□□□□□ -1.89
VPS29YHR012W RPC10P40422 70 aa3.25□□□□□ -1.89
VPS29YHR012W SAE3P89114 91 aa3.25□□□□□ -1.89
VPS29YHR012W PKR1Q03880 122 aaKnown RBP3.25□□□□□ -1.89
VPS29YHR012W NAT5Q08689 176 aa3.25□□□□□ -1.89
VPS29YHR012W HTL1Q9URQ5 78 aa3.25□□□□□ -1.89
VPS29YHR012W YKR032WP36127 104 aa3.24□□□□□ -1.89
VPS29YHR012W YBR209WP38311 105 aa3.24□□□□□ -1.89
VPS29YHR012W PET8P38921 284 aa3.24□□□□□ -1.89
VPS29YHR012W YAR029WP39549 74 aa3.24□□□□□ -1.89
VPS29YHR012W CIN5P40917 295 aa3.24□□□□□ -1.89
VPS29YHR012W HAC1P41546 238 aa3.24□□□□□ -1.89
VPS29YHR012W POP3P53833 195 aaPredicted RBP3.24□□□□□ -1.89
VPS29YHR012W YIL014C-AQ02598 104 aa3.24□□□□□ -1.89
VPS29YHR012W YDL157CQ12082 118 aa3.24□□□□□ -1.89
VPS29YHR012W YLR050CQ12155 161 aaKnown RBP3.24□□□□□ -1.89
VPS29YHR012W SEC11P15367 167 aa3.23□□□□□ -1.89
VPS29YHR012W YCR007CP25354 239 aa3.23□□□□□ -1.89
VPS29YHR012W MSL1P40567 111 aaPredicted RBP3.23□□□□□ -1.89
VPS29YHR012W GLO1P50107 326 aa3.23□□□□□ -1.89
VPS29YHR012W YGL230CP53074 147 aa3.23□□□□□ -1.89
VPS29YHR012W MMS2P53152 137 aa3.23□□□□□ -1.89
VPS29YHR012W YMR175W-AQ3E766 64 aa3.23□□□□□ -1.89
VPS29YHR012W YPR014CQ6B0W2 109 aa3.23□□□□□ -1.89
VPS29YHR012W ADH2P00331 348 aaKnown RBP3.22□□□□□ -1.89
VPS29YHR012W TRP1P00912 224 aa3.22□□□□□ -1.89
VPS29YHR012W AIM29P36154 155 aa3.22□□□□□ -1.89
VPS29YHR012W YAL064WP39711 94 aa3.22□□□□□ -1.89
VPS29YHR012W GLC8P41818 229 aa3.22□□□□□ -1.89
VPS29YHR012W MGR2Q02889 113 aa3.22□□□□□ -1.89
VPS29YHR012W YDR042CQ03205 200 aa3.22□□□□□ -1.89
VPS29YHR012W YLR194CQ05777 254 aa3.22□□□□□ -1.89
VPS29YHR012W YGL041C-BQ3E750 60 aa3.22□□□□□ -1.89
VPS29YHR012W SCS22Q6Q595 175 aa3.22□□□□□ -1.89
VPS29YHR012W YCL021W-AQ96VH3 125 aa3.22□□□□□ -1.89
VPS29YHR012W PFY1P07274 126 aa3.21□□□□□ -1.9
VPS29YHR012W RPL27BP0C2H7 136 aaKnown RBP3.21□□□□□ -1.9
VPS29YHR012W FYV4P38783 130 aaPredicted RBP3.21□□□□□ -1.9
VPS29YHR012W RPF1P38805 295 aaKnown RBP3.21□□□□□ -1.9
VPS29YHR012W PAU23Q07987 124 aa3.21□□□□□ -1.9
VPS29YHR012W PAU17Q12370 124 aa3.21□□□□□ -1.9
VPS29YHR012W AQY1P0CD91 305 aa3.2□□□□□ -1.9
VPS29YHR012W HAP3P13434 144 aa3.2□□□□□ -1.9
VPS29YHR012W PRE1P22141 198 aaKnown RBP3.2□□□□□ -1.9
VPS29YHR012W PCL2P25693 308 aa3.2□□□□□ -1.9
VPS29YHR012W APS1P35181 156 aa3.2□□□□□ -1.9
VPS29YHR012W RPL32P38061 130 aaKnown RBP3.2□□□□□ -1.9
VPS29YHR012W YGL088WP53151 121 aa3.2□□□□□ -1.9
VPS29YHR012W YOR008C-AQ3E7B9 74 aa3.2□□□□□ -1.9
VPS29YHR012W YBL112CQ3E7Y4 105 aa3.2□□□□□ -1.9
VPS29YHR012W RPL31AP0C2H8 113 aaKnown RBP3.19□□□□□ -1.9
VPS29YHR012W VTC1P40046 129 aaRIP-Chip data3.19□□□□□ -1.9not detected
VPS29YHR012W YER085CP40058 173 aa3.19□□□□□ -1.9
VPS29YHR012W AIM19P40502 157 aa3.19□□□□□ -1.9
VPS29YHR012W TOS6P48560 102 aa3.19□□□□□ -1.9
VPS29YHR012W YMR103CQ04436 120 aa3.19□□□□□ -1.9
VPS29YHR012W YDL241WQ07738 123 aa3.19□□□□□ -1.9
VPS29YHR012W YLR112WQ12130 139 aa3.19□□□□□ -1.9
VPS29YHR012W YKL044WP36092 106 aa3.18□□□□□ -1.9
VPS29YHR012W YBL081WP38180 368 aaKnown RBP3.18□□□□□ -1.9
VPS29YHR012W UIP3P39547 235 aa3.18□□□□□ -1.9
VPS29YHR012W YJR146WP47174 117 aa3.18□□□□□ -1.9
VPS29YHR012W CWC27Q02770 301 aa3.18□□□□□ -1.9
VPS29YHR012W ECM12O13529 151 aa3.17□□□□□ -1.9
VPS29YHR012W HMRA2P0CY13 119 aa3.17□□□□□ -1.9
Retrieved 100 of 5,963 RNA–protein pairs in 20.6 ms