RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 TMEM109Q9BVC6 243 aa20.08■□□□□ 0.8
USP48-201ENST00000308271 C21orf2O43822 256 aa20.08■□□□□ 0.8
USP48-201ENST00000308271 SRP72O76094 671 aaKnown RBP20.08■□□□□ 0.8
USP48-201ENST00000308271 PRKCEQ02156 737 aa20.08■□□□□ 0.8
USP48-201ENST00000308271 STRIP1Q5VSL9 837 aa20.08■□□□□ 0.8
USP48-201ENST00000308271 ALG3Q92685 438 aa20.08■□□□□ 0.8
USP48-201ENST00000308271 NSMCE4AQ9NXX6 385 aa20.08■□□□□ 0.8
USP48-201ENST00000308271 SLC12A6Q9UHW9 1150 aa20.08■□□□□ 0.8
USP48-201ENST00000308271 CLEC11AQ9Y240 323 aa20.08■□□□□ 0.8
USP48-201ENST00000308271 DGKIO75912 1065 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 ARP10275 920 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 RXRBP28702 533 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 THEMIS2Q5TEJ8 643 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 CEP19Q96LK0 163 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 NAT9Q9BTE0 207 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 TARS2Q9BW92 718 aaKnown RBP20.07■□□□□ 0.8
USP48-201ENST00000308271 NEUROG2Q9H2A3 272 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 HOXC10Q9NYD6 342 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 DEAF1O75398 565 aaPredicted RBP20.07■□□□□ 0.8
USP48-201ENST00000308271 NR3C2P08235 984 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 CCDC15Q0P6D6 951 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 KYAT1Q16773 422 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 FAXCQ5TGI0 409 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 RNF135Q8IUD6 432 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 NCLNQ969V3 563 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 AGAP3Q96P47 875 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 SIKE1Q9BRV8 207 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 ACAD9Q9H845 621 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 KCNK4Q9NYG8 393 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 ARMCX1Q9P291 453 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 AP4S1Q9Y587 144 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 C5orf60A6NFR6 353 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 SLITRK3O94933 977 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 KCNT1Q5JUK3 1230 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 METTL23Q86XA0 190 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 KATNAL2Q8IYT4 538 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 GMCL1Q96IK5 515 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 LRMDAQ9H2I8 198 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 MARCKSL1P49006 195 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 IYDQ6PHW0 289 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 LPAR1Q92633 364 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 DNPEPQ9ULA0 475 aa20.07■□□□□ 0.8
USP48-201ENST00000308271 MST1RQ04912 1400 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 DCDC2CA8MYV0 355 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 HUS1O60921 280 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 NOL4O94818 638 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 XRRA1Q6P2D8 792 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 TTC33Q6PID6 262 aaPredicted RBP20.06■□□□□ 0.8
USP48-201ENST00000308271 CATSPER4Q7RTX7 472 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 DEFB107AQ8IZN7 70 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 SLC25A41Q8N5S1 370 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 LINC00116Q8NCU8 138 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 SRPK1Q96SB4 655 aaKnown RBP20.06■□□□□ 0.8
USP48-201ENST00000308271 BLOC1S6Q9UL45 172 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 ASTN1O14525 1302 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 CYP1A2P05177 515 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 GSTT1P30711 240 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 ELK3P41970 407 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 RGS7P49802 495 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 STAT5BP51692 787 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 KCNA1Q09470 495 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 ZNF268Q14587 947 aaPredicted RBP20.06■□□□□ 0.8
USP48-201ENST00000308271 DDHD1Q8NEL9 900 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 GDPD5Q8WTR4 605 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 ZFRQ96KR1 1074 aaKnown RBP20.06■□□□□ 0.8
USP48-201ENST00000308271 C2CD2LO14523 706 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 FSCN2O14926 492 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 INPP1P49441 399 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 WLSQ5T9L3 541 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 GPR141Q7Z602 305 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 TBRG4Q969Z0 631 aaKnown RBP eCLIP20.06■□□□□ 0.8
USP48-201ENST00000308271 KCNMB3Q9NPA1 279 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 THAP1Q9NVV9 213 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 LZTS1Q9Y250 596 aa20.06■□□□□ 0.8
USP48-201ENST00000308271 FAM86B1E9PN63 330 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 MMP10P09238 476 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 FAM86B2P0C5J1 330 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 FDFT1P37268 417 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 TBL3Q12788 808 aaKnown RBP20.05■□□□□ 0.8
USP48-201ENST00000308271 MXD4Q14582 209 aaPredicted RBP20.05■□□□□ 0.8
USP48-201ENST00000308271 MFSD7Q6UXD7 560 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 SMIM5Q71RC9 77 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 LRRC57Q8N9N7 239 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 FAM200BP0CF97 657 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 RALBP11234 206 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 ABCE1P61221 599 aaKnown RBP20.05■□□□□ 0.8
USP48-201ENST00000308271 BAATQ14032 418 aaPredicted RBP20.05■□□□□ 0.8
USP48-201ENST00000308271 PDK1Q15118 436 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 KCNV1Q6PIU1 500 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 MPP4Q96JB8 637 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 SEPT3Q9UH03 358 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 AGAP1Q9UPQ3 857 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 TRPC5OSA6NMA1 111 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 H2AFYO75367 372 aaKnown RBP20.05■□□□□ 0.8
USP48-201ENST00000308271 VCAM1P19320 739 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 GSCP56915 257 aaPredicted RBP20.05■□□□□ 0.8
USP48-201ENST00000308271 HABP4Q5JVS0 413 aaKnown RBP20.05■□□□□ 0.8
USP48-201ENST00000308271 DDIASQ8IXT1 998 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 CYGBQ8WWM9 190 aa20.05■□□□□ 0.8
USP48-201ENST00000308271 C3orf70A6NLC5 250 aaPredicted RBP20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms