RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 CSF1P09603 554 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 CCDC175P0C221 793 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 PCP11498 1178 aaKnown RBP6.85□□□□□ -1.31
VPS29-210ENST00000552130 PDE6AP16499 860 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 HLA-DPA1P20036 260 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 DPP6P42658 865 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 TRPC1P48995 793 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 SUMO3P55854 103 aaPredicted RBP6.85□□□□□ -1.31
VPS29-210ENST00000552130 CAP1Q01518 475 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 KCNAB2Q13303 367 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 PRPF4BQ13523 1007 aaKnown RBP6.85□□□□□ -1.31
VPS29-210ENST00000552130 CUL4BQ13620 913 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 RAB30Q15771 203 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 MAP3K21Q5TCX8 1036 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 E4F1Q66K89 784 aaPredicted RBP6.85□□□□□ -1.31
VPS29-210ENST00000552130 NFRKBQ6P4R8 1299 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 BORAQ6PGQ7 559 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 CEP128Q6ZU80 1094 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 SZRD1Q7Z422 152 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 FRMD5Q7Z6J6 570 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 CCDC103Q8IW40 242 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 THNSL1Q8IYQ7 743 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 SRBD1Q8N5C6 995 aaKnown RBP6.85□□□□□ -1.31
VPS29-210ENST00000552130 LINC01356Q8N9X3 169 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 LINC00116Q8NCU8 138 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 DENND1AQ8TEH3 1009 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 NRG4Q8WWG1 115 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 GIMAP1Q8WWP7 306 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 RTF1Q92541 710 aaKnown RBP6.85□□□□□ -1.31
VPS29-210ENST00000552130 EID2BQ96D98 161 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 FAM120BQ96EK7 910 aaKnown RBP6.85□□□□□ -1.31
VPS29-210ENST00000552130 BORCS6Q96GS4 357 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 TCTN2Q96GX1 697 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 ITPAQ9BY32 194 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 EIF2AQ9BY44 585 aaKnown RBP6.85□□□□□ -1.31
VPS29-210ENST00000552130 FOXP3Q9BZS1 431 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 SMURF1Q9HCE7 757 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 SERHLQ9NQF3 203 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 ACSS2Q9NR19 701 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 TBCCD1Q9NVR7 557 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS29-210ENST00000552130 CHORDC1Q9UHD1 332 aaPredicted RBP6.85□□□□□ -1.31
VPS29-210ENST00000552130 FAM184BQ9ULE4 1060 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 TBX20Q9UMR3 447 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 SCAF8Q9UPN6 1271 aaKnown RBP6.85□□□□□ -1.31
VPS29-210ENST00000552130 CLCA2Q9UQC9 943 aa6.85□□□□□ -1.31
VPS29-210ENST00000552130 CFAP20Q9Y6A4 193 aaKnown RBP6.85□□□□□ -1.31
VPS29-210ENST00000552130 IRS2Q9Y4H2 1338 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 AGAP14A8MT82 685 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 BOLA2-SMG1P6H3BVE0 249 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 SLC16A6O15403 523 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 FMO6PO60774 539 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 STAM2O75886 525 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 USP1O94782 785 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 LPLP06858 475 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 SFTPCP11686 197 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 MYL4P12829 197 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 KRT15P19012 456 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 FGFR4P22455 802 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 ADSLP30566 484 aaPredicted RBP6.84□□□□□ -1.31
VPS29-210ENST00000552130 GRK3P35626 688 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 ARL3P36405 182 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 DSC2Q02487 901 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 MAMLD1Q13495 774 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 SEC23AQ15436 765 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 ADIPOQQ15848 244 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 PITRM1Q5JRX3 1037 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 FSTL4Q6MZW2 842 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 TIGD7Q6NT04 549 aaPredicted RBP6.84□□□□□ -1.31
VPS29-210ENST00000552130 IYDQ6PHW0 289 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 C11orf88Q6PI97 169 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 DCLRE1AQ6PJP8 1040 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 KLHL17Q6TDP4 642 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 CPLX4Q7Z7G2 160 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 TTC7BQ86TV6 843 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 LDHDQ86WU2 507 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 NOSTRINQ8IVI9 506 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 RNF168Q8IYW5 571 aaPredicted RBP6.84□□□□□ -1.31
VPS29-210ENST00000552130 ZDHHC14Q8IZN3 488 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 ZNF655Q8N720 491 aaPredicted RBP6.84□□□□□ -1.31
VPS29-210ENST00000552130 IPMKQ8NFU5 416 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 KAT5Q92993 513 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 RNF125Q96EQ8 232 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 BICD1Q96G01 975 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 TWNKQ96RR1 684 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 DDX23Q9BUQ8 820 aaKnown RBP6.84□□□□□ -1.31
VPS29-210ENST00000552130 DNAI2Q9GZS0 605 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 RNPEPQ9H4A4 650 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 ERVMER34-1Q9H9K5 563 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 ERVK-5Q9HDB9 667 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 RXFP3Q9NSD7 469 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 SEPT11Q9NVA2 429 aaKnown RBP6.84□□□□□ -1.31
VPS29-210ENST00000552130 ADPRHL2Q9NX46 363 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 HOXC10Q9NYD6 342 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 TCFL5Q9UL49 500 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 ZNF215Q9UL58 517 aaPredicted RBP6.84□□□□□ -1.31
VPS29-210ENST00000552130 DTNAQ9Y4J8 743 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 PCDHA5Q9Y5H7 936 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 CYP46A1Q9Y6A2 500 aa6.84□□□□□ -1.31
VPS29-210ENST00000552130 PIP5K1BO14986 540 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms