RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 EZH2Q15910 746 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 CCDC144BQ3MJ40 725 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 SLC10A4Q96EP9 437 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 EYA1Q99502 592 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 SENP7Q9BQF6 1050 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 FRMD8Q9BZ67 464 aaPredicted RBP14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 BHMT2Q9H2M3 363 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 SNRPAP09012 282 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 GMFBP60983 142 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 ZNF302Q9NR11 478 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 HOXC10Q9NYD6 342 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 MGAT4DA6NG13 374 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 B2RBV5 119 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 DDHD2O94830 711 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 ARF4P18085 180 aaPredicted RBP14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 TAF13Q15543 124 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 KNOP1Q1ED39 458 aaKnown RBP14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 MZT2AQ6P582 158 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 CYFIP1Q7L576 1253 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 RAD54BQ9Y620 910 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 ASB14A6NK59 587 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 GCLMP48507 274 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 EID3Q8N140 333 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 DSN1Q9H410 356 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 EFCAB1Q9HAE3 211 aa14.47□□□□□ -0.09
CCDC88A-201ENST00000263630 C2orf81A6NN90 581 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 IQCJ-SCHIP1C9J366 451 aaPredicted RBP14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 PHF2O75151 1096 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 ENO2P09104 434 aaPredicted RBP14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 DGUOKQ16854 277 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 ZNF614Q8N883 585 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 SEC16BQ96JE7 1060 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 RAB6BQ9NRW1 208 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 RBAKQ9NYW8 714 aaPredicted RBP14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 PPP1R37O75864 691 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 TPP2P29144 1249 aaPredicted RBP14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 PDK1Q15118 436 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 OTUD7AQ8TE49 926 aaPredicted RBP14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 C18orf8Q96DM3 657 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 ZFRQ96KR1 1074 aaKnown RBP14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 CCT8L2Q96SF2 557 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 PAK5Q9P286 719 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 KCNJ6P48051 423 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 GNA13Q14344 377 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 NEK5Q6P3R8 708 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 ANKMY2Q8IV38 441 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 ATG16L2Q8NAA4 619 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 EPB41L4BQ9H329 900 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 GSTK1Q9Y2Q3 226 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 MIEF2Q96C03 454 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 ERP27Q96DN0 273 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 ROPN1BQ9BZX4 212 aaPredicted RBP14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 ROPN1Q9HAT0 212 aaPredicted RBP14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 ALG13Q9NP73 1137 aaKnown RBP14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 RNF112Q9ULX5 631 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 AP3D1O14617 1153 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 ECE2O60344 883 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 APBA3O96018 575 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 CRKP46108 304 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 CTCFP49711 727 aaPredicted RBP14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 TIMM50Q3ZCQ8 353 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 CIAO1O76071 339 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 SKP1P63208 163 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 SUGP1Q8IWZ8 645 aaKnown RBP14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 POLR1BQ9H9Y6 1135 aa14.46□□□□□ -0.09
CCDC88A-201ENST00000263630 RBBP4Q09028 425 aa14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 ZRANB3Q5FWF4 1079 aa14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 RESP18Q5W5W9 173 aa14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 RTKN2Q8IZC4 609 aa14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 TRPV3Q8NET8 790 aa14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 SLC7A14Q8TBB6 771 aa14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 RNPC3Q96LT9 517 aaKnown RBP14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 BDH2Q9BUT1 245 aa14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 MARCOQ9UEW3 520 aaPredicted RBP14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 KIAA0391O15091 583 aaKnown RBP14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 ABRAXAS1Q6UWZ7 409 aa14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 ULK2Q8IYT8 1036 aa14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 RASGRP4Q8TDF6 673 aa14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 KIF12Q96FN5 646 aa14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 FAM217BQ9NTX9 383 aaPredicted RBP14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 LNPEPQ9UIQ6 1025 aa14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 NEU2Q9Y3R4 380 aa14.46□□□□□ -0.1
CCDC88A-201ENST00000263630 HARS2P49590 506 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 DRAP1Q14919 205 aaPredicted RBP14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 MFSD14CQ5VZR4 134 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 KCNV1Q6PIU1 500 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 KDELC2Q7Z4H8 507 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 SLC20A1Q8WUM9 679 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 MIEF1Q9NQG6 463 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 PHF11Q9UIL8 331 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 NCKAP5LQ9HCH0 1330 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 CYP24A1Q07973 514 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 MPOP05164 745 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 GYS2P54840 703 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 KCNT1Q5JUK3 1230 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 LINC00301Q8NCQ3 95 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 AGAP3Q96P47 875 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 YEATS2Q9ULM3 1422 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 KPNA5O15131 536 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 THRAP10827 490 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms