RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 SLC9A3R1O14745 358 aaPredicted RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 COBLO75128 1261 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 MPOP05164 745 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 PCSK2P16519 638 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 EIF2AK2P19525 551 aaKnown RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 MRPL28Q13084 256 aaKnown RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 ACBD5Q5T8D3 534 aaPredicted RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 CCNI2Q6ZMN8 369 aaPredicted RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 ZNF662Q6ZS27 426 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 RGS9BPQ6ZS82 235 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 CYB5R4Q7L1T6 521 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 CCDC127Q96BQ5 260 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 XAB2Q9HCS7 855 aaKnown RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 PPARGC1AQ9UBK2 798 aaKnown RBP8.17□□□□□ -1.1
VPS13D-211ENST00000543710 KLHL3Q9UH77 587 aa8.17□□□□□ -1.1
VPS13D-211ENST00000543710 MYMKA6NI61 221 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 BTNL10A8MVZ5 291 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 VHLP40337 213 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 GTF2H3Q13889 308 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 LRRC32Q14392 662 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 CCDC85BQ15834 202 aaPredicted RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 BBS9Q3SYG4 887 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 WASHC2DQ5SRD0 308 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 BSPRYQ5W0U4 402 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 RSPH1Q8WYR4 309 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 EIF2AK1Q9BQI3 630 aaKnown RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 TMEM47Q9BQJ4 181 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 FTHL17Q9BXU8 183 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 GANQ9H2C0 597 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 COG4Q9H9E3 785 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 DGAT1O75907 488 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 FGF19O95750 216 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 SERPINB3P29508 390 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 FKBP1AP62942 108 aaKnown RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 DYNLL1P63167 89 aaKnown RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 DRAP1Q14919 205 aaPredicted RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 C11orf63Q6NUN7 778 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 KCTD1Q719H9 257 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 ZC3H18Q86VM9 953 aaKnown RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 OSBPL1AQ9BXW6 950 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 MRPL1Q9BYD6 325 aaKnown RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 ING2Q9H160 280 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 RPL26L1Q9UNX3 145 aaKnown RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 SAC3D1A6NKF1 404 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 ATG13O75143 517 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 MARK3P27448 753 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 ATICP31939 592 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 AVPR1AP37288 418 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 ARID5BQ14865 1188 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 PHKG1Q16816 387 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 TIGD7Q6NT04 549 aaPredicted RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 SRBD1Q8N5C6 995 aaKnown RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 GPRASP2Q96D09 838 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 NLRP4Q96MN2 994 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 XPO6Q96QU8 1125 aaKnown RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 NMRK1Q9NWW6 199 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 SLC24A2Q9UI40 661 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 AP4S1Q9Y587 144 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 GEMIN4P57678 1058 aaKnown RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 GFPT1Q06210 699 aaPredicted RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 MCL1Q07820 350 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 PDK1Q15118 436 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 AARS2Q5JTZ9 985 aaKnown RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 E4F1Q66K89 784 aaPredicted RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 SALL1Q9NSC2 1324 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 M0QYV0 167 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 TGM2P21980 687 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 RPL22P35268 128 aaKnown RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 SPRP35270 261 aaPredicted RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 OR1G1P47890 313 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 RBP5P82980 135 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 DAB2P98082 770 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 TFAMQ00059 246 aaKnown RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 OCRLQ01968 901 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 CYLC2Q14093 348 aaPredicted RBP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 FLOT2Q14254 428 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 DUOXA2Q1HG44 320 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 ZDHHC17Q8IUH5 632 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 CXorf38Q8TB03 319 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 AFG1LQ8WV93 481 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 CYFIP2Q96F07 1278 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 DYDC2Q96IM9 177 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 FAM161BQ96MY7 647 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 AP1M1Q9BXS5 423 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 CALN1Q9BXU9 219 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.16□□□□□ -1.1
VPS13D-211ENST00000543710 ABHD16BQ9H3Z7 469 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 TRABDQ9H4I3 376 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 SP110Q9HB58 689 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 C8orf4Q9NR00 106 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 SAGE1Q9NXZ1 904 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 RABGEF1Q9UJ41 708 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 GRID1Q9ULK0 1009 aa8.16□□□□□ -1.1
VPS13D-211ENST00000543710 BNIP3LO60238 219 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 FKBP6O75344 327 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 SUPT3HO75486 399 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 FAM107AO95990 144 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 SLC2A3P11169 496 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 PFKPQ01813 784 aa8.15□□□□□ -1.1
VPS13D-211ENST00000543710 PDIA2Q13087 525 aaKnown RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms