RNA–Protein interactions for RNA: ENST00000457373.5

RFX3-210, Transcript of regulatory factor X3, human

TSL 5

Gene RFX3, Length 822 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFX3-210	ENST00000457373	OR10T2	Q8NGX3	314 aa		10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	SLC7A14	Q8TBB6	771 aa		10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	SUSD6	Q92537	303 aa		10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	SMG7	Q92540	1137 aa	Known RBP	10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	SYAP1	Q96A49	352 aa	Predicted RBP	10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	RIPOR3	Q96MK2	946 aa		10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	UHRF1	Q96T88	793 aa	Predicted RBP	10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	RTP3	Q9BQQ7	232 aa		10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	SRRT	Q9BXP5	876 aa	Known RBP	10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	COL25A1	Q9BXS0	654 aa	Predicted RBP	10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	OXCT2	Q9BYC2	517 aa	Predicted RBP	10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	PRKD2	Q9BZL6	878 aa		10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	POMK	Q9H5K3	350 aa		10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	DDX43	Q9NXZ2	648 aa	Known RBP	10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	NXF1	Q9UBU9	619 aa	Known RBP	10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	AFF4	Q9UHB7	1163 aa	Known RBP	10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	POLI	Q9UNA4	740 aa		10.82	□□□□□ -0.68
RFX3-210	ENST00000457373	BRWD1	Q9NSI6	2320 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	PRRG1	O14668	218 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	SLC16A3	O15427	465 aa	Known RBP	10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	CCL16	O15467	120 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	HCRT	O43612	131 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	MBD3	O95983	291 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	HLA-DRA	P01903	254 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	LRG1	P02750	347 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	ATF2	P15336	505 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	SP100	P23497	879 aa	Predicted RBP	10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	ACAT1	P24752	427 aa	Known RBP	10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	PIK3CA	P42336	1068 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	NLRP12	P59046	1061 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	TNNC1	P63316	161 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	MYL7	Q01449	175 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	GPR17	Q13304	367 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	NCOA4	Q13772	614 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	SOWAHA	Q2M3V2	549 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	UVSSA	Q2YD98	709 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	ZNF699	Q32M78	642 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	ZACN	Q401N2	412 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	SLC39A12	Q504Y0	691 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	ZNF667	Q5HYK9	610 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	TPGS2	Q68CL5	300 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	CCDC149	Q6ZUS6	474 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	DPH6	Q7L8W6	267 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	CREBRF	Q8IUR6	639 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	ZC3H3	Q8IXZ2	948 aa	Known RBP	10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	ADGRF2	Q8IZF7	708 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	TMEM86A	Q8N2M4	240 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	TOP6BL	Q8N6T0	577 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	CMAS	Q8NFW8	434 aa	Predicted RBP	10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	RPGRIP1	Q96KN7	1286 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	CEP63	Q96MT8	703 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	PHF7	Q9BWX1	381 aa	Predicted RBP	10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	ZCWPW1	Q9H0M4	648 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	ZDHHC7	Q9NXF8	308 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	SLC27A5	Q9Y2P5	690 aa		10.81	□□□□□ -0.68
RFX3-210	ENST00000457373	MTMR11	A4FU01	709 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	STX10	O60499	249 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	STAU1	O95793	577 aa	Known RBP	10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	PDGFRB	P09619	1106 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	NDUFV2	P19404	249 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	ABL2	P42684	1182 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	LHX1	P48742	406 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	DUSP4	Q13115	394 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	TPD52L1	Q16890	204 aa	Predicted RBP	10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	SGSM1	Q2NKQ1	1148 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	ARSI	Q5FYB1	569 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	KRT39	Q6A163	491 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	SPOPL	Q6IQ16	392 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	SCARA5	Q6ZMJ2	495 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	C15orf39	Q6ZRI6	1047 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	GRASP	Q7Z6J2	395 aa	Predicted RBP	10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	LRRTM3	Q86VH5	581 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	ADHFE1	Q8IWW8	467 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	DCP1B	Q8IZD4	617 aa	Known RBP	10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	MLKL	Q8NB16	471 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	ATAD1	Q8NBU5	361 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	OR6B3	Q8NGW1	331 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	TAS1R2	Q8TE23	839 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	ZNF707	Q96C28	371 aa	Predicted RBP	10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	NECTIN4	Q96NY8	510 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	MRPL45	Q9BRJ2	306 aa	Known RBP	10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	PI4K2A	Q9BTU6	479 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	XYLT2	Q9H1B5	865 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	SNX25	Q9H3E2	840 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	TMEM8A	Q9HCN3	771 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	PRKAG3	Q9UGI9	489 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	ARMCX3	Q9UH62	379 aa	Predicted RBP	10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	RWDD2A	Q9UIY3	292 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	DOCK6	Q96HP0	2047 aa		10.8	□□□□□ -0.68
RFX3-210	ENST00000457373	GABRD	O14764	452 aa		10.79	□□□□□ -0.68
RFX3-210	ENST00000457373	XYLB	O75191	536 aa		10.79	□□□□□ -0.68
RFX3-210	ENST00000457373	LRRN2	O75325	713 aa		10.79	□□□□□ -0.68
RFX3-210	ENST00000457373	VNN2	O95498	520 aa		10.79	□□□□□ -0.68
RFX3-210	ENST00000457373	FGFR1OP	O95684	399 aa	Known RBP	10.79	□□□□□ -0.68
RFX3-210	ENST00000457373	HNRNPA1	P09651	372 aa	Known RBP eCLIP	10.79	□□□□□ -0.68
RFX3-210	ENST00000457373	WARS	P23381	471 aa	Known RBP	10.79	□□□□□ -0.68
RFX3-210	ENST00000457373	LMO2	P25791	158 aa		10.79	□□□□□ -0.68
RFX3-210	ENST00000457373	GTF2H1	P32780	548 aa		10.79	□□□□□ -0.68
RFX3-210	ENST00000457373	GNL1	P36915	607 aa	Predicted RBP	10.79	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms