RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 NFASCO94856 1347 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 RRP8O43159 456 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 MRPS5P82675 430 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 TRAPPC12Q8WVT3 735 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 HES6Q96HZ4 224 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 SPZ1Q9BXG8 430 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 KLC2Q9H0B6 622 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 TLR9Q9NR96 1032 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 INHBAP08476 426 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 CYP21A2P08686 494 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 PTPN3P26045 913 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 NPEPPSP55786 919 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 LAMB3Q13751 1172 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 RBBP7Q16576 425 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 CELF3Q5SZQ8 465 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 KLHL35Q6PF15 583 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 FAM47EQ6ZV65 393 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 GAS2L3Q86XJ1 694 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 GPR135Q8IZ08 494 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 SNX31Q8N9S9 440 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 BRI3BPQ8WY22 251 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 ZFP42Q96MM3 310 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 JMJD4Q9H9V9 463 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 A1CFQ9NQ94 594 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 CD207Q9UJ71 328 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 PCDHB2Q9Y5E7 798 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 NFKBIEO00221 500 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 KRIT1O00522 736 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 DTNBO60941 627 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 IGSF6O95976 241 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 KELP23276 732 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 OR1D2P34982 312 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 CHKAP35790 457 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 CENPAP49450 140 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 CREB5Q02930 508 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 LAMTOR4Q0VGL1 99 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 ACAP2Q15057 778 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 MMEL1Q495T6 779 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 P2RX5Q93086 422 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 FAF2Q96CS3 445 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 PNKPQ96T60 521 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 TMEM117Q9H0C3 514 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 OSBPL2Q9H1P3 480 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 WDCPQ9H6R7 721 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 TRMT13Q9NUP7 481 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 LCMT1Q9UIC8 334 aa9.66□□□□□ -0.86
LIMCH1-202ENST00000381753 CACNB4O00305 520 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 ARIH2O95376 493 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 SMPD1P17405 629 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 EN2P19622 333 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 FOXM1Q08050 763 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 SYT15Q9BQS2 421 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 C11orf70Q9BRQ4 267 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 ZDHHC6Q9H6R6 413 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 SPECC1L-ADORA2AF8WAN1 911 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 GARTP22102 1010 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 CLCN6P51797 869 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 HPCAP84074 193 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 PUS10Q3MIT2 529 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 SLC24A5Q71RS6 500 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 BBOF1Q8ND07 529 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 PDZD8Q8NEN9 1154 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 OR8D1Q8WZ84 308 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 PLEKHF1Q96S99 279 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 PSMB7Q99436 277 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 IL23AQ9NPF7 189 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 TRPM1Q7Z4N2 1603 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 FAM205AQ6ZU69 1335 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 BUB1BO60566 1050 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 ANXA6P08133 673 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 ZFXP17010 805 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 PGM5Q15124 567 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 INSCQ1MX18 579 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 NAALADL2Q58DX5 795 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 LPPQ93052 612 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 MCCC1Q96RQ3 725 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 RAD9AQ99638 391 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 PDCD2LQ9BRP1 358 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 HAUS8Q9BT25 410 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 TXLNGQ9NUQ3 528 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 DZANK1Q9NVP4 752 aa9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 PPIEQ9UNP9 301 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-202ENST00000381753 HEATR9A2RTY3 570 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 SETMARQ53H47 684 aaPredicted RBP9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 HECTD3Q5T447 861 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 PHF19Q5T6S3 580 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 CYP2U1Q7Z449 544 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 PPHLN1Q8NEY8 458 aaKnown RBP9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 DHTKD1Q96HY7 919 aaPredicted RBP9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 REXO5Q96IC2 774 aaKnown RBP9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 NECTIN4Q96NY8 510 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 MTMR9Q96QG7 549 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 WDR18Q9BV38 432 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 TEX12Q9BXU0 123 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 RTFDC1Q9BY42 306 aaPredicted RBP9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 DNAJC17Q9NVM6 304 aaKnown RBP9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 SEPT3Q9UH03 358 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 HNRNPCL2B2RXH8 293 aa9.65□□□□□ -0.87
LIMCH1-202ENST00000381753 HNRNPCL1O60812 293 aaKnown RBP9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms