RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 CBWD6Q4V339 395 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 CBWD3Q5JTY5 395 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 CBWD5Q5RIA9 395 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 CYFIP1Q7L576 1253 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 CTAGE3PQ8IX95 158 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 TAB3Q8N5C8 712 aaPredicted RBP10.96□□□□□ -0.65
LIG1-220ENST00000601091 SLC20A1Q8WUM9 679 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 STMN2Q93045 179 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 MTMR12Q9C0I1 747 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 PCDH18Q9HCL0 1135 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 ZNF70Q9UC06 446 aaPredicted RBP10.96□□□□□ -0.65
LIG1-220ENST00000601091 CHMP2BQ9UQN3 213 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 ZHX2Q9Y6X8 837 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 CD58P19256 250 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 FNTAP49354 379 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 OXCT1P55809 520 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 BMT2Q1RMZ1 405 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 CCDC62Q6P9F0 684 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 TRIM72Q6ZMU5 477 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 CENPUQ71F23 418 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 LRRC49Q8IUZ0 686 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 PPFIBP2Q8ND30 876 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 ANKK1Q8NFD2 765 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 NSUN6Q8TEA1 469 aaKnown RBP10.96□□□□□ -0.66
LIG1-220ENST00000601091 CASP10Q92851 521 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 ATP6V1E2Q96A05 226 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 EIF2AQ9BY44 585 aaKnown RBP10.96□□□□□ -0.66
LIG1-220ENST00000601091 UBE2OQ9C0C9 1292 aaKnown RBP10.96□□□□□ -0.66
LIG1-220ENST00000601091 SLC40A1Q9NP59 571 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 RNF146Q9NTX7 359 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 STK39Q9UEW8 545 aa10.96□□□□□ -0.66
LIG1-220ENST00000601091 SPATA31A6Q5VVP1 1343 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 GOLGA8SH3BPF8 625 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 RARGP13631 454 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 NR1H3Q13133 447 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 STK11Q15831 433 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 HABP4Q5JVS0 413 aaKnown RBP10.95□□□□□ -0.66
LIG1-220ENST00000601091 EPM2AIP1Q7L775 607 aaPredicted RBP10.95□□□□□ -0.66
LIG1-220ENST00000601091 COL23A1Q86Y22 540 aaPredicted RBP10.95□□□□□ -0.66
LIG1-220ENST00000601091 SLC5A5Q92911 643 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 NDFIP2Q9NV92 336 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 ITGB1BP2Q9UKP3 347 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 TMED5Q9Y3A6 229 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 PCDHB2Q9Y5E7 798 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 CCT8L1PA6NM43 557 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 SPECC1L-ADORA2AF8WAN1 911 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 SHOX2O60902 331 aaPredicted RBP10.95□□□□□ -0.66
LIG1-220ENST00000601091 GNA15P30679 374 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 TFAMQ00059 246 aaKnown RBP10.95□□□□□ -0.66
LIG1-220ENST00000601091 PLA2G4FQ68DD2 849 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 TMEM35BQ8NCS4 154 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 NSMCE1Q8WV22 266 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 GIMAP1Q8WWP7 306 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 SPACA7Q96KW9 195 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 HSD17B14Q9BPX1 270 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 MRIQ9BWK5 157 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 FAM129AQ9BZQ8 928 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 TXNDC16Q9P2K2 825 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 MYH6P13533 1939 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 GRIN2DO15399 1336 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 FRMPD4Q14CM0 1322 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 AKAP11Q9UKA4 1901 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 IGKV6D-41A0A0C4DH26 115 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 TRIM64A6NGJ6 449 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 TRIM64BA6NI03 449 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 TCP11X1B4DZS4 312 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 TGFB1I1O43294 461 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 SLC4A1P02730 911 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 FDX1P10109 184 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 P4HA1P13674 534 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 BLVRAP53004 296 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 CDR2Q01850 454 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 RBM20Q5T481 1227 aaKnown RBP10.95□□□□□ -0.66
LIG1-220ENST00000601091 IZUMO3Q5VZ72 239 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 FAM160B1Q5W0V3 765 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 C11orf63Q6NUN7 778 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 FAM47EQ6ZV65 393 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 CPA5Q8WXQ8 436 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 LPAR1Q92633 364 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 CNGB3Q9NQW8 809 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 ANKEF1Q9NU02 776 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 ATPIF1Q9UII2 106 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 COL18A1P39060 1754 aa10.95□□□□□ -0.66
LIG1-220ENST00000601091 CFAP73A6NFT4 308 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 WDR46O15213 610 aaKnown RBP10.94□□□□□ -0.66
LIG1-220ENST00000601091 CDH16O75309 829 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 DGAT1O75907 488 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 TBXAS1P24557 533 aaPredicted RBP10.94□□□□□ -0.66
LIG1-220ENST00000601091 AP2B1P63010 937 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 DYNLT1P63172 113 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 SPARCL1Q14515 664 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 TAF11Q15544 211 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 CHADLQ6NUI6 762 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 ERICH1Q86X53 443 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 CBWD2Q8IUF1 395 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 ARHGEF26Q96DR7 871 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 KCNQ5Q9NR82 932 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 TXLNGQ9NUQ3 528 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 FAM198AQ9UFP1 575 aa10.94□□□□□ -0.66
LIG1-220ENST00000601091 AGO2Q9UKV8 859 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms