RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 RNASEH2AO75792 299 aaKnown RBP10.98□□□□□ -0.65
LIG1-220ENST00000601091 KRT1P04264 644 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 TMEM191BP0C7N4 346 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 SNRPFP62306 86 aaKnown RBP10.98□□□□□ -0.65
LIG1-220ENST00000601091 TTLL12Q14166 644 aaPredicted RBP10.98□□□□□ -0.65
LIG1-220ENST00000601091 DNAJC24Q6P3W2 148 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 SRRM1Q8IYB3 904 aaKnown RBP10.98□□□□□ -0.65
LIG1-220ENST00000601091 NELL1Q92832 810 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 PRMT6Q96LA8 375 aaPredicted RBP10.98□□□□□ -0.65
LIG1-220ENST00000601091 IDI2Q9BXS1 227 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 MLXIPLQ9NP71 852 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 GTF3C4Q9UKN8 822 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 PCDHA10Q9Y5I2 948 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 SPATA31C1P0DKV0 1188 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 ITIH2P19823 946 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 CCNCP24863 283 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 ZNF844Q08AG5 666 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 LRRC14Q15048 493 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 LGSNQ5TDP6 509 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 ANKRD20A3Q5VUR7 823 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 SLC13A5Q86YT5 568 aaPredicted RBP10.98□□□□□ -0.65
LIG1-220ENST00000601091 ETNPPLQ8TBG4 499 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 RAPGEF5Q92565 580 aa10.98□□□□□ -0.65
LIG1-220ENST00000601091 GRXCR2A6NFK2 248 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 APOEP02649 317 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 GZMAP12544 262 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 TMEM270Q6UE05 265 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 TMC3Q7Z5M5 1100 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 RHOT1Q8IXI2 618 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 GPD1LQ8N335 351 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 TTLL6Q8N841 843 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 SCFD2Q8WU76 684 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 SH3KBP1Q96B97 665 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 OPTNQ96CV9 577 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 C8orf48Q96LL4 319 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 TBCBQ99426 244 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 PITPNM3Q9BZ71 974 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 UBN1Q9NPG3 1134 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 FBXO28Q9NVF7 368 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 HOXC10Q9NYD6 342 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 DDX20Q9UHI6 824 aaKnown RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 DBR1Q9UK59 544 aaKnown RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 TRPC6Q9Y210 931 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 POLRMTO00411 1230 aaKnown RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 ATMINO43313 823 aaPredicted RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 DIAPH2O60879 1101 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 TJP3O95049 919 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 TNNC2P02585 160 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 CYP3A4P08684 503 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 SLURP2P0DP57 97 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 COILP38432 576 aaPredicted RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 SLC1A1P43005 524 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 MAP3K7CLP57077 242 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 ASTE1Q2TB18 679 aaPredicted RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 LRRC15Q8TF66 581 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 TEKT4Q8WW24 435 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 C18orf8Q96DM3 657 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 PRMT1Q99873 361 aaKnown RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 CBWD1Q9BRT8 395 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 NRDE2Q9H7Z3 1164 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 ATP6V0A4Q9HBG4 840 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 SPC25Q9HBM1 224 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 TMX2Q9Y320 296 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 MYH7P12883 1935 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 BAZ2AQ9UIF9 1905 aaKnown RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 ADAMTSL3P82987 1691 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 TAL1P17542 331 aaPredicted RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 DDR1Q08345 913 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 P3H1Q32P28 736 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 SWSAP1Q6NVH7 229 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 C1orf186Q6ZWK4 172 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 ZNF572Q7Z3I7 529 aaPredicted RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 BPHLQ86WA6 291 aaPredicted RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 PASD1Q8IV76 773 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 RNF25Q96BH1 459 aaPredicted RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 VPS50Q96JG6 964 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 MSTO1Q9BUK6 570 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 ROPN1BQ9BZX4 212 aaPredicted RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 ROPN1Q9HAT0 212 aaPredicted RBP10.97□□□□□ -0.65
LIG1-220ENST00000601091 TMEM8AQ9HCN3 771 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 ADAMTS7Q9UKP4 1686 aa10.97□□□□□ -0.65
LIG1-220ENST00000601091 TMEM247A6NEH6 219 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 ZBTB39O15060 712 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 UPP2O95045 317 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 CHRNA5P30532 468 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 PCK1P35558 622 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 CLK2P49760 499 aaKnown RBP10.96□□□□□ -0.65
LIG1-220ENST00000601091 SYDE1Q6ZW31 735 aaPredicted RBP10.96□□□□□ -0.65
LIG1-220ENST00000601091 TTC39CQ8N584 583 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 LILRB1Q8NHL6 650 aaPredicted RBP10.96□□□□□ -0.65
LIG1-220ENST00000601091 MCUR1Q96AQ8 359 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 SH3GL2Q99962 352 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 SAYSD1Q9NPB0 183 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 ATAD3AQ9NVI7 634 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 ZNF510Q9Y2H8 683 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 ASTN1O14525 1302 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 TLR3O15455 904 aaKnown RBP10.96□□□□□ -0.65
LIG1-220ENST00000601091 SGPL1O95470 568 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 CA4P22748 312 aa10.96□□□□□ -0.65
LIG1-220ENST00000601091 PCSK7Q16549 785 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms