RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 CEP83Q9Y592 693 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 MROH7Q68CQ1 1323 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 NFICP08651 508 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 MESDQ14696 234 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 PPP2R5EQ16537 467 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 BEND6Q5SZJ8 279 aaPredicted RBP17.95■□□□□ 0.46
LDLR-206ENST00000557958 NOTUMQ6P988 496 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 SLC27A1Q6PCB7 646 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 ARRDC4Q8NCT1 418 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 GLT1D1Q96MS3 346 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 FAM124BQ9H5Z6 455 aaPredicted RBP17.95■□□□□ 0.46
LDLR-206ENST00000557958 PLEKHA5Q9HAU0 1116 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 MRPL47Q9HD33 250 aaKnown RBP17.95■□□□□ 0.46
LDLR-206ENST00000557958 ITGA11Q9UKX5 1188 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 NOC2LQ9Y3T9 749 aaKnown RBP17.95■□□□□ 0.46
LDLR-206ENST00000557958 SCINQ9Y6U3 715 aa17.95■□□□□ 0.46
LDLR-206ENST00000557958 CCDC66A2RUB6 948 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 ATMINO43313 823 aaPredicted RBP17.94■□□□□ 0.46
LDLR-206ENST00000557958 SPOPO43791 374 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 GPR32O75388 356 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 CD58P19256 250 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 LBX1P52954 281 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 PTPROQ16827 1216 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 TMEM192Q8IY95 271 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 CPA5Q8WXQ8 436 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 LRRC1Q9BTT6 524 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 PLVAPQ9BX97 442 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 ZNF518BQ9C0D4 1074 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 NOD1Q9Y239 953 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 DERAQ9Y315 318 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 GRIN2DO15399 1336 aa17.94■□□□□ 0.46
LDLR-206ENST00000557958 GOLGA6L10A0A0M3HER8 536 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 A0A0U1RQG5 324 aaPredicted RBP17.93■□□□□ 0.46
LDLR-206ENST00000557958 KBTBD13C9JR72 458 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 DDX3YO15523 660 aaKnown RBP17.93■□□□□ 0.46
LDLR-206ENST00000557958 MED7O43513 233 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 CCL5P13501 91 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 DARSP14868 501 aaKnown RBP17.93■□□□□ 0.46
LDLR-206ENST00000557958 ASPAP45381 313 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 YARSP54577 528 aaKnown RBP17.93■□□□□ 0.46
LDLR-206ENST00000557958 NOMO3P69849 1222 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 C1QBPQ07021 282 aaKnown RBP17.93■□□□□ 0.46
LDLR-206ENST00000557958 PTGISQ16647 500 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 SLC10A6Q3KNW5 377 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 MON1BQ7L1V2 547 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 PHF13Q86YI8 300 aaPredicted RBP17.93■□□□□ 0.46
LDLR-206ENST00000557958 NME8Q8N427 588 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 TTC39CQ8N584 583 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 C1orf127Q8N9H9 656 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 ZNF606Q8WXB4 792 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 CYFIP2Q96F07 1278 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 ACBD3Q9H3P7 528 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 VRTNQ9H8Y1 702 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 LCMT1Q9UIC8 334 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 TMEM59LQ9UK28 342 aa17.93■□□□□ 0.46
LDLR-206ENST00000557958 TMEM110-MUSTN1A8MSY1 372 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 KRIT1O00522 736 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 CABYRO75952 493 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 ITGB3P05106 788 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 COMTP21964 271 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 EIF4BP23588 611 aaKnown RBP17.92■□□□□ 0.46
LDLR-206ENST00000557958 RNASE9P60153 205 aaKnown RBP17.92■□□□□ 0.46
LDLR-206ENST00000557958 GPS2Q13227 327 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 WDR72Q3MJ13 1102 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 ZSWIM1Q9BR11 485 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 CYP3A43Q9HB55 503 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 STARD7Q9NQZ5 370 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 TRMT13Q9NUP7 481 aaKnown RBP17.92■□□□□ 0.46
LDLR-206ENST00000557958 ADAM22Q9P0K1 906 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 NXF1Q9UBU9 619 aaKnown RBP17.92■□□□□ 0.46
LDLR-206ENST00000557958 SIX4Q9UIU6 781 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 BRCA2P51587 3418 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 FAM170AA1A519 330 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 MOXD2PA6NHM9 499 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 CTSHP09668 335 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 HSPA8P11142 646 aaKnown RBP17.92■□□□□ 0.46
LDLR-206ENST00000557958 TNFRSF8P28908 595 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 SLC1A1P43005 524 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 FAM193AP78312 1265 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 RBP5P82980 135 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 SCARA5Q6ZMJ2 495 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 IFT20Q8IY31 132 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 TMEM35BQ8NCS4 154 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 RNPC3Q96LT9 517 aaKnown RBP17.92■□□□□ 0.46
LDLR-206ENST00000557958 FUT8Q9BYC5 575 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 BCO2Q9BYV7 579 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 TRIM6Q9C030 488 aaPredicted RBP17.92■□□□□ 0.46
LDLR-206ENST00000557958 ANAPC7Q9UJX3 599 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 L1RE1Q9UN81 338 aa17.92■□□□□ 0.46
LDLR-206ENST00000557958 A0A1W2PQ45 241 aaPredicted RBP17.91■□□□□ 0.46
LDLR-206ENST00000557958 A0A1W2PQY0 241 aa17.91■□□□□ 0.46
LDLR-206ENST00000557958 M0QZ92 97 aa17.91■□□□□ 0.46
LDLR-206ENST00000557958 MYO1FO00160 1098 aa17.91■□□□□ 0.46
LDLR-206ENST00000557958 NPTXRO95502 500 aa17.91■□□□□ 0.46
LDLR-206ENST00000557958 CALB1P05937 261 aa17.91■□□□□ 0.46
LDLR-206ENST00000557958 PAEPP09466 180 aa17.91■□□□□ 0.46
LDLR-206ENST00000557958 CTNNA2P26232 953 aa17.91■□□□□ 0.46
LDLR-206ENST00000557958 SEL1L2Q5TEA6 688 aa17.91■□□□□ 0.46
LDLR-206ENST00000557958 TAF2Q6P1X5 1199 aa17.91■□□□□ 0.46
LDLR-206ENST00000557958 CCNI2Q6ZMN8 369 aaPredicted RBP17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms