RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 STPG1Q5TH74 334 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 DSTYKQ6XUX3 929 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 TMC8Q8IU68 726 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 TTC8Q8TAM2 541 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 BPIFB1Q8TDL5 484 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 PGLYRP2Q96PD5 576 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 TIPINQ9BVW5 301 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 DDX19AQ9NUU7 478 aaKnown RBP18.43■□□□□ 0.54
VPS29-204ENST00000548259 GTSE1Q9NYZ3 720 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 ANKFY1Q9P2R3 1169 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 ZMYM5Q9UJ78 669 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 CFAP47Q6ZTR5 3102 aa18.43■□□□□ 0.54
VPS29-204ENST00000548259 M0QZQ0 153 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 CLDN3O15551 220 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 HIP1RO75146 1068 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 PAX3P23760 479 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 MATR3P43243 847 aaKnown RBP eCLIP18.42■□□□□ 0.54
VPS29-204ENST00000548259 FXR2P51116 673 aaKnown RBP eCLIP18.42■□□□□ 0.54
VPS29-204ENST00000548259 SMTNP53814 917 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 MYBPC2Q14324 1141 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 TAF12Q16514 161 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 KYAT1Q16773 422 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 GPR158Q5T848 1215 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 TXNDC11Q6PKC3 985 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 PSMG2Q969U7 264 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 RSPRY1Q96DX4 576 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 TMEM209Q96SK2 561 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 LRRC3Q9BY71 257 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 HSFX1Q9UBD0 423 aa18.42■□□□□ 0.54
VPS29-204ENST00000548259 NOL7Q9UMY1 257 aaKnown RBP18.42■□□□□ 0.54
VPS29-204ENST00000548259 CNOT1A5YKK6 2376 aaKnown RBP18.41■□□□□ 0.54
VPS29-204ENST00000548259 GABRR2P28476 465 aa18.41■□□□□ 0.54
VPS29-204ENST00000548259 WEE1P30291 646 aa18.41■□□□□ 0.54
VPS29-204ENST00000548259 CDC25CP30307 473 aa18.41■□□□□ 0.54
VPS29-204ENST00000548259 TUFMP49411 452 aaKnown RBP18.41■□□□□ 0.54
VPS29-204ENST00000548259 PDIA5Q14554 519 aa18.41■□□□□ 0.54
VPS29-204ENST00000548259 ME3Q16798 604 aa18.41■□□□□ 0.54
VPS29-204ENST00000548259 SLC10A6Q3KNW5 377 aa18.41■□□□□ 0.54
VPS29-204ENST00000548259 TTC38Q5R3I4 469 aa18.41■□□□□ 0.54
VPS29-204ENST00000548259 DNAJB7Q7Z6W7 309 aaPredicted RBP18.41■□□□□ 0.54
VPS29-204ENST00000548259 SNX29Q8TEQ0 813 aa18.41■□□□□ 0.54
VPS29-204ENST00000548259 KIF12Q96FN5 646 aa18.41■□□□□ 0.54
VPS29-204ENST00000548259 ZFYVE19Q96K21 471 aa18.41■□□□□ 0.54
VPS29-204ENST00000548259 VPS45Q9NRW7 570 aa18.41■□□□□ 0.54
VPS29-204ENST00000548259 UBQLN1Q9UMX0 589 aaKnown RBP18.41■□□□□ 0.54
VPS29-204ENST00000548259 NCANO14594 1321 aa18.41■□□□□ 0.54
VPS29-204ENST00000548259 CLTAP09496 248 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 CYP3A5P20815 502 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 LRPAP1P30533 357 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 RAP1GAPP47736 663 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 TRAPPC10P48553 1259 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 MCM2P49736 904 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 ELF2Q15723 593 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 KRT79Q5XKE5 535 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 OVOS1Q6IE37 1185 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 CENPPQ6IPU0 288 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 ZPBP2Q6X784 338 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 CAMKK1Q8N5S9 505 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 TSPAN18Q96SJ8 248 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 DNAJC25Q9H1X3 360 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 FOXP1Q9H334 677 aaPredicted RBP18.4■□□□□ 0.54
VPS29-204ENST00000548259 TASP1Q9H6P5 420 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 TUBGCP4Q9UGJ1 667 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 TIMM13Q9Y5L4 95 aaPredicted RBP18.4■□□□□ 0.54
VPS29-204ENST00000548259 TICRRQ7Z2Z1 1910 aa18.4■□□□□ 0.54
VPS29-204ENST00000548259 CEP295Q9C0D2 2601 aa18.39■□□□□ 0.54
VPS29-204ENST00000548259 H0YCG3 227 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 TM4SF5O14894 197 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 SLC16A4O15374 487 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 EXTL3O43909 919 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 JAK2O60674 1132 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 PROS1P07225 676 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 OR4Q2P0C623 313 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 ODC1P11926 461 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 TYMPP19971 482 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 MPLP40238 635 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 PPP2R3AQ06190 1150 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 ECM1Q16610 540 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 STXBP5Q5T5C0 1151 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 RNF43Q68DV7 783 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 GAREM2Q75VX8 874 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 KBTBD6Q86V97 674 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 GPIHBP1Q8IV16 184 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 C8orf76Q96K31 380 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 NTPCRQ9BSD7 190 aaKnown RBP18.39■□□□□ 0.53
VPS29-204ENST00000548259 LSM14BQ9BX40 385 aaKnown RBP18.39■□□□□ 0.53
VPS29-204ENST00000548259 SLC27A5Q9Y2P5 690 aa18.39■□□□□ 0.53
VPS29-204ENST00000548259 COL4A2P08572 1712 aa18.38■□□□□ 0.53
VPS29-204ENST00000548259 MTMR11A4FU01 709 aa18.38■□□□□ 0.53
VPS29-204ENST00000548259 ABLIM1O14639 778 aa18.38■□□□□ 0.53
VPS29-204ENST00000548259 RHOBTB1O94844 696 aa18.38■□□□□ 0.53
VPS29-204ENST00000548259 KCNK5O95279 499 aa18.38■□□□□ 0.53
VPS29-204ENST00000548259 GUCY1B3Q02153 619 aa18.38■□□□□ 0.53
VPS29-204ENST00000548259 MCL1Q07820 350 aa18.38■□□□□ 0.53
VPS29-204ENST00000548259 KARSQ15046 597 aaKnown RBP18.38■□□□□ 0.53
VPS29-204ENST00000548259 CCDC6Q16204 474 aa18.38■□□□□ 0.53
VPS29-204ENST00000548259 TAS1R3Q7RTX0 852 aa18.38■□□□□ 0.53
VPS29-204ENST00000548259 ATAD1Q8NBU5 361 aa18.38■□□□□ 0.53
VPS29-204ENST00000548259 SPIRE2Q8WWL2 714 aa18.38■□□□□ 0.53
VPS29-204ENST00000548259 BICD1Q96G01 975 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms