RNA–Protein interactions for RNA: ENST00000546298.5

YBX3-218, Transcript of Y-box binding protein 3, human

TSL 4

Gene YBX3, Length 564 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-218	ENST00000546298	OR4Q2	P0C623	313 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	CEBPB	P17676	345 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	ADSS	P30520	456 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	TUFM	P49411	452 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	EPHA5	P54756	1037 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	DUSP4	Q13115	394 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	SNW1	Q13573	536 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	ANGPT1	Q15389	498 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	SV2C	Q496J9	727 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	PRSS36	Q5K4E3	855 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	CENPP	Q6IPU0	288 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	ITIH5	Q86UX2	942 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	BRSK2	Q8IWQ3	736 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	IQUB	Q8NA54	791 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	E2F7	Q96AV8	911 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	ELSPBP1	Q96BH3	223 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	ZNF560	Q96MR9	790 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	PYM1	Q9BRP8	204 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	FAM213A	Q9BRX8	229 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	OSBPL6	Q9BZF3	934 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	TNMD	Q9H2S6	317 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	TFIP11	Q9UBB9	837 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	MRPS17	Q9Y2R5	130 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	R3HCC1	Q9Y3T6	440 aa	Known RBP	10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	MUC3A	Q02505	3323 aa		10.12	□□□□□ -0.79
YBX3-218	ENST00000546298	CACNA1H	O95180	2353 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	MTMR11	A4FU01	709 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	KPNA7	A9QM74	516 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	CYB561D2	O14569	222 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	SPTLC1	O15269	473 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	NCAM2	O15394	837 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	EXTL3	O43909	919 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	MAGEA9	P43362	315 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	TFAM	Q00059	246 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	VEPH1	Q14D04	833 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	SURF1	Q15526	300 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	FAM78A	Q5JUQ0	283 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	ATL3	Q6DD88	541 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	TANGO2	Q6ICL3	276 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	CRELD2	Q6UXH1	353 aa	Predicted RBP	10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	DCP1B	Q8IZD4	617 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	HS6ST3	Q8IZP7	471 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	TMEM130	Q8N3G9	435 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	ATAD1	Q8NBU5	361 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	KCNG4	Q8TDN1	519 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	C2orf15	Q8WU43	125 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	DEPDC1B	Q8WUY9	529 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	DNASE1L2	Q92874	299 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	SMARCD2	Q92925	531 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	NKD2	Q969F2	451 aa	Predicted RBP	10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	TCEAL4	Q96EI5	215 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	ASB16	Q96NS5	453 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	PGLYRP2	Q96PD5	576 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	DDX23	Q9BUQ8	820 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	TRMT61B	Q9BVS5	477 aa	Known RBP	10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	BCO2	Q9BYV7	579 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	SEMA4A	Q9H3S1	761 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	SLITRK6	Q9H5Y7	841 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	BRD9	Q9H8M2	597 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	MAGEF1	Q9HAY2	307 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	RBAK	Q9NYW8	714 aa	Predicted RBP	10.11	□□□□□ -0.79
YBX3-218	ENST00000546298	MYO10	Q9HD67	2058 aa		10.11	□□□□□ -0.79
YBX3-218	ENST00000546298		A0A087X0B3	334 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	FAM170B	A6NMN3	283 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	MAN2B1	O00754	1011 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	HUS1	O60921	280 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	PRPF6	O94906	941 aa	Known RBP	10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	DCN	P07585	359 aa	Known RBP	10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	ZSCAN22	P10073	491 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	PSMC3	P17980	439 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	ASIC1	P78348	528 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	RBP5	P82980	135 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	KCNA1	Q09470	495 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	UBXN2B	Q14CS0	331 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	TEAD2	Q15562	447 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	TAF12	Q16514	161 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	ARHGAP15	Q53QZ3	475 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	WSCD1	Q658N2	575 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	ZNF852	Q6ZMS4	543 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	DNAJB7	Q7Z6W7	309 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	GPD1L	Q8N335	351 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	LRRC52	Q8N7C0	313 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	PJA1	Q8NG27	643 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	ZSCAN18	Q8TBC5	510 aa	Predicted RBP	10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	FAM200A	Q8TCP9	573 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	NOC3L	Q8WTT2	800 aa	Known RBP	10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	IRF7	Q92985	503 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	PSMG2	Q969U7	264 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	DHX58	Q96C10	678 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	SAAL1	Q96ER3	474 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	TRIM9	Q9C026	710 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	ZCWPW1	Q9H0M4	648 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	TRPV4	Q9HBA0	871 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	KIAA1586	Q9HCI6	787 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	KBTBD4	Q9NVX7	518 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	FAM13B	Q9NYF5	915 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	CFAP45	Q9UL16	551 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	SLC27A5	Q9Y2P5	690 aa		10.1	□□□□□ -0.79
YBX3-218	ENST00000546298	GOLGA8IP	A6NC78	632 aa		10.09	□□□□□ -0.79
YBX3-218	ENST00000546298	ZNF233	A6NK53	670 aa		10.09	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms