RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 NFIXQ14938 502 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 LONRF1Q17RB8 773 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 GALNT6Q8NCL4 622 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 SH3GLB2Q9NR46 395 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 CCDC59Q9P031 241 aaKnown RBP13.91□□□□□ -0.18
USP40-208ENST00000450966 AKT3Q9Y243 479 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 CCDC195A0A1B0GUA6 201 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 A6NJR5 290 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 SNPHO15079 494 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 XPAP23025 273 aaPredicted RBP13.91□□□□□ -0.18
USP40-208ENST00000450966 PTK2Q05397 1052 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 GPKOWQ92917 476 aaPredicted RBP eCLIP13.91□□□□□ -0.18
USP40-208ENST00000450966 NCLNQ969V3 563 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 MTERF3Q96E29 417 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 NLRP4Q96MN2 994 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 WRNIP1Q96S55 665 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 MROH7Q68CQ1 1323 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 PNMA6FA0A0J9YX94 578 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 TAC1P20366 129 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 MYL7Q01449 175 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 SF3B3Q15393 1217 aaKnown RBP13.91□□□□□ -0.18
USP40-208ENST00000450966 SLC15A2Q16348 729 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 AKAP14Q86UN6 197 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.91□□□□□ -0.18
USP40-208ENST00000450966 BTBD10Q9BSF8 475 aa13.91□□□□□ -0.18
USP40-208ENST00000450966 CCDC78A2IDD5 438 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 ADORA1P30542 326 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 RCAN1P53805 252 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 ITGA7Q13683 1181 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 NCCRP1Q6ZVX7 275 aaPredicted RBP13.9□□□□□ -0.18
USP40-208ENST00000450966 CMTR1Q8N1G2 835 aaKnown RBP13.9□□□□□ -0.18
USP40-208ENST00000450966 CLEC4FQ8N1N0 589 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 DQX1Q8TE96 717 aaKnown RBP13.9□□□□□ -0.18
USP40-208ENST00000450966 ZCWPW1Q9H0M4 648 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 ZFYVE28Q9HCC9 887 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 TLR7Q9NYK1 1049 aaKnown RBP13.9□□□□□ -0.18
USP40-208ENST00000450966 CLIC5Q9NZA1 410 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 FIS1Q9Y3D6 152 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 PDZK1P1A8MUH7 402 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 RAD51BO15315 384 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 USP1O94782 785 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 ITIH2P19823 946 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 TGFB2P61812 414 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 UBE3AQ05086 875 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 PRR23BQ6ZRT6 265 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 PARK7Q99497 189 aaKnown RBP13.9□□□□□ -0.18
USP40-208ENST00000450966 TMEM206Q9H813 350 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 SEPT9Q9UHD8 586 aaPredicted RBP13.9□□□□□ -0.18
USP40-208ENST00000450966 TJP3O95049 919 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 SLC4A1P02730 911 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 STXBP2Q15833 593 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 TAF1BQ53T94 588 aaPredicted RBP13.9□□□□□ -0.18
USP40-208ENST00000450966 KIAA1841Q6NSI8 718 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 PPP4R4Q6NUP7 873 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 TUBGCP5Q96RT8 1024 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 PLA2G12BQ9BX93 195 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 DDX56Q9NY93 547 aaKnown RBP13.9□□□□□ -0.18
USP40-208ENST00000450966 PSMC3IPQ9P2W1 217 aaPredicted RBP13.9□□□□□ -0.18
USP40-208ENST00000450966 ZNF521Q96K83 1311 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 C19orf81C9J6K1 198 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 PSMG1O95456 288 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 ADD1P35611 737 aaKnown RBP13.9□□□□□ -0.18
USP40-208ENST00000450966 DLG4P78352 724 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 ORC2Q13416 577 aaPredicted RBP13.9□□□□□ -0.18
USP40-208ENST00000450966 XRCC4Q13426 336 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 LPIN1Q14693 890 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 GRPEL2Q8TAA5 225 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 GDPD5Q8WTR4 605 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 OLFM1Q99784 485 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 GRIP2Q9C0E4 1043 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 MTFR1LQ9H019 292 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 PABPC3Q9H361 631 aaKnown RBP13.9□□□□□ -0.18
USP40-208ENST00000450966 SAR1AQ9NR31 198 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 SOX13Q9UN79 622 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 MROH7-TTC4A0A0A0MT08 1334 aa13.9□□□□□ -0.18
USP40-208ENST00000450966 NOTOA8MTQ0 251 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 USP17L15C9J2P7 530 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 USP17L13C9JLJ4 530 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 USP17L11C9JVI0 530 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 USP17L18D6R9N7 530 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 USP17L22D6RA61 530 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 USP17L17D6RBQ6 530 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 USP17L19D6RCP7 530 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 USP17L20D6RJB6 530 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 RGL2O15211 777 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 GFPT2O94808 682 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 GDF11O95390 407 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 TUFMP49411 452 aaKnown RBP13.89□□□□□ -0.19
USP40-208ENST00000450966 USP17L24Q0WX57 530 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 TJAP1Q5JTD0 557 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 S100ZQ8WXG8 99 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 ZBTB18Q99592 522 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 MANSC1Q9H8J5 431 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 PIH1D3Q9NQM4 214 aaKnown RBP13.89□□□□□ -0.19
USP40-208ENST00000450966 LIMA1Q9UHB6 759 aaKnown RBP13.89□□□□□ -0.19
USP40-208ENST00000450966 DPPA5A6NC42 116 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 HNRNPDLO14979 420 aaKnown RBP13.89□□□□□ -0.19
USP40-208ENST00000450966 BIRC5O15392 142 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 IFNA8P32881 189 aa13.89□□□□□ -0.19
USP40-208ENST00000450966 CDK8P49336 464 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms