RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SARSP49591 514 aaKnown RBP14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 ORC2Q13416 577 aaPredicted RBP14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 ARHGEF26Q96DR7 871 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 VPS33BQ9H267 617 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 GDAQ9Y2T3 454 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 UHRF1BP1LA0JNW5 1464 aa14.54□□□□□ -0.08
CCDC88A-201ENST00000263630 DUOX2Q9NRD8 1548 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 PGM3O95394 542 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 CHRNB3Q05901 458 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 PPIDQ08752 370 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 SEMA3FQ13275 785 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 ATL2Q8NHH9 583 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 OSBPL8Q9BZF1 889 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 SIK2Q9H0K1 926 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 MUC3BQ9H195 1237 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 XDHP47989 1333 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 CYP2D7A0A087X1C5 515 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 EIF2B2P49770 351 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 ANKRD27Q96NW4 1050 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 SMAPO00193 183 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 SRGAP2O75044 1071 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 CNPP09543 421 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 SPANXN2Q5MJ10 180 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 SVOPQ8N4V2 548 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 GPT2Q8TD30 523 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 CLMNQ96JQ2 1002 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 MNTQ99583 582 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 FAM49AQ9H0Q0 323 aaPredicted RBP14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 COPS7BQ9H9Q2 264 aaPredicted RBP14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 KLHL11Q9NVR0 708 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 POLBP06746 335 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 LIN54Q6MZP7 749 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 C11orf96Q7Z7L8 435 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 MED15Q96RN5 788 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 LEMD3Q9Y2U8 911 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 SEC24BO95487 1268 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 NOS3P29474 1203 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 PPP2R1BP30154 601 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 RPL19P84098 196 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 USP10Q14694 798 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 UNC13DQ70J99 1090 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 SCFD2Q8WU76 684 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 OSCP1Q8WVF1 389 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 EXTL3O43909 919 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 MYL12AP19105 171 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 SUCLG2Q96I99 432 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 FRMD6Q96NE9 622 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 CLCC1Q96S66 551 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 ARHGAP31Q2M1Z3 1444 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 TRIM43BA6NCK2 446 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 CPB1P15086 417 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 ATP6V1B1P15313 513 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 HOXD10P28358 340 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 PEX5P50542 639 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 COPAP53621 1224 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 ZSWIM7Q19AV6 140 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 FAM83EQ2M2I3 478 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 DGKKQ5KSL6 1271 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 HAVCR1Q96D42 359 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 THUMPD3Q9BV44 507 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 ZW10O43264 779 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 SOAT2O75908 522 aa14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 C1orf131Q8NDD1 294 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 XPO7Q9UIA9 1087 aaKnown RBP14.53□□□□□ -0.08
CCDC88A-201ENST00000263630 GOLGA4Q13439 2230 aaKnown RBP14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 LOC102724159A0A0B4J2E5 919 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 VWA5AO00534 786 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 HSMCR30P0CW71 290 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 LRRC14Q15048 493 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 PWP2Q15269 919 aaKnown RBP14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 ZNF394Q53GI3 561 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 GRID1Q9ULK0 1009 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 FAM220BPB1ANY3 271 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 SMIM22K7EJ46 135 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 TM9SF1O15321 606 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 GUCY1B2O75343 617 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 VAMP7P51809 220 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 TYW3Q6IPR3 259 aaKnown RBP14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 URB2Q14146 1524 aaKnown RBP14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 F5H423 210 aaPredicted RBP14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 ZMYND11Q15326 602 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 SKIV2LQ15477 1246 aaKnown RBP14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 C11orf74Q86VG3 221 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 RNF25Q96BH1 459 aaPredicted RBP14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 SLC9A7Q96T83 725 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 CATSPERBQ9H7T0 1116 aa14.52□□□□□ -0.08
CCDC88A-201ENST00000263630 MTMR1Q13613 665 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 ZNF57Q68EA5 555 aaPredicted RBP14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 CLYBLQ8N0X4 340 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 STAT3P40763 770 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 UBXN2AP68543 259 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 MRPS25P82663 173 aaKnown RBP14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 DLGAP2Q9P1A6 1054 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 PI4KBQ9UBF8 816 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 SNX4O95219 450 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 GYS1P13807 737 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 TWF1Q12792 350 aa14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 SPATA2LQ8IUW3 424 aaPredicted RBP14.52□□□□□ -0.09
CCDC88A-201ENST00000263630 FAM129BQ96TA1 746 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms