RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 GPR62Q9BZJ7 368 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 ASB7Q9H672 318 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 KIAA1586Q9HCI6 787 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 TSC2P49815 1807 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 PTPRJQ12913 1337 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 MYH10P35580 1976 aa16.22■□□□□ 0.19
TRIM28-207ENST00000597136 PPEF2O14830 753 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 MAPK13O15264 365 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 EPB41P11171 864 aaKnown RBP16.21■□□□□ 0.19
TRIM28-207ENST00000597136 EEF1GP26641 437 aaKnown RBP16.21■□□□□ 0.19
TRIM28-207ENST00000597136 MARSP56192 900 aaKnown RBP16.21■□□□□ 0.19
TRIM28-207ENST00000597136 TMEM132DQ14C87 1099 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 SNRNP35Q16560 246 aaKnown RBP16.21■□□□□ 0.19
TRIM28-207ENST00000597136 LMBRD2Q68DH5 695 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-207ENST00000597136 FRMD5Q7Z6J6 570 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 DDX53Q86TM3 631 aaKnown RBP16.21■□□□□ 0.19
TRIM28-207ENST00000597136 CREBRFQ8IUR6 639 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 CD302Q8IX05 232 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 FAM186BQ8IYM0 893 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 VPS52Q8N1B4 723 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 PLEKHO2Q8TD55 490 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 BORCS6Q96GS4 357 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 B3GALT6Q96L58 329 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 POP1Q99575 1024 aaKnown RBP16.21■□□□□ 0.19
TRIM28-207ENST00000597136 GRPEL1Q9HAV7 217 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 SLC38A7Q9NVC3 462 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 MAGEC2Q9UBF1 373 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-207ENST00000597136 ADAM28Q9UKQ2 775 aa16.21■□□□□ 0.19
TRIM28-207ENST00000597136 I3L4J1 428 aa16.21■□□□□ 0.18
TRIM28-207ENST00000597136 TADA2AO75478 443 aa16.21■□□□□ 0.18
TRIM28-207ENST00000597136 B3GAT3O94766 335 aa16.21■□□□□ 0.18
TRIM28-207ENST00000597136 IL18RAPO95256 599 aa16.21■□□□□ 0.18
TRIM28-207ENST00000597136 POU5F1Q01860 360 aaKnown RBP16.21■□□□□ 0.18
TRIM28-207ENST00000597136 CCDC40Q4G0X9 1142 aa16.21■□□□□ 0.18
TRIM28-207ENST00000597136 DCLRE1AQ6PJP8 1040 aa16.21■□□□□ 0.18
TRIM28-207ENST00000597136 MICAL1Q8TDZ2 1067 aa16.21■□□□□ 0.18
TRIM28-207ENST00000597136 MFSD14AQ96MC6 490 aa16.21■□□□□ 0.18
TRIM28-207ENST00000597136 TLR9Q9NR96 1032 aa16.21■□□□□ 0.18
TRIM28-207ENST00000597136 ARMCX3Q9UH62 379 aaPredicted RBP16.21■□□□□ 0.18
TRIM28-207ENST00000597136 LIMA1Q9UHB6 759 aaKnown RBP16.21■□□□□ 0.18
TRIM28-207ENST00000597136 PUF60Q9UHX1 559 aaKnown RBP16.21■□□□□ 0.18
TRIM28-207ENST00000597136 UBQLN1Q9UMX0 589 aaKnown RBP16.21■□□□□ 0.18
TRIM28-207ENST00000597136 LZTS1Q9Y250 596 aa16.21■□□□□ 0.18
TRIM28-207ENST00000597136 UNC80Q8N2C7 3258 aa16.21■□□□□ 0.18
TRIM28-207ENST00000597136 LRRC10BA6NIK2 292 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 HIDE1A8MVS5 230 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 PODXLO00592 558 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 FSCN2O14926 492 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 GTF2F1P35269 517 aaKnown RBP eCLIP16.2■□□□□ 0.185e-6■■□□□ 13.8
TRIM28-207ENST00000597136 BRCC3P46736 316 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 TFAMQ00059 246 aaKnown RBP16.2■□□□□ 0.18
TRIM28-207ENST00000597136 UBE3AQ05086 875 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 CYP24A1Q07973 514 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 KRT31Q15323 416 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 PLPP4Q5VZY2 271 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 FUT10Q6P4F1 479 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 APTXQ7Z2E3 356 aaKnown RBP16.2■□□□□ 0.18
TRIM28-207ENST00000597136 TMC7Q7Z402 723 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 ADGRD2Q7Z7M1 963 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 OR5B17Q8NGF7 314 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 LMAN2LQ9H0V9 348 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 METTL14Q9HCE5 456 aaKnown RBP16.2■□□□□ 0.18
TRIM28-207ENST00000597136 DPP3Q9NY33 737 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 LMCD1Q9NZU5 365 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 C2orf16Q68DN1 1984 aa16.2■□□□□ 0.18
TRIM28-207ENST00000597136 CXCL14O95715 111 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 MTIF2P46199 727 aaKnown RBP16.19■□□□□ 0.18
TRIM28-207ENST00000597136 FANCCQ00597 558 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 PTPROQ16827 1216 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 TRIM59Q8IWR1 403 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 RNF168Q8IYW5 571 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-207ENST00000597136 ANKRD20A12PQ8NF67 263 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 ZNF516Q92618 1163 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 CCDC127Q96BQ5 260 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 UROC1Q96N76 676 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 TCF25Q9BQ70 676 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 TUBGCP2Q9BSJ2 902 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 ZBP1Q9H171 429 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 STXBP5LQ9Y2K9 1186 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 DERAQ9Y315 318 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 C2CD2Q9Y426 696 aa16.19■□□□□ 0.18
TRIM28-207ENST00000597136 PER2O15055 1255 aa16.18■□□□□ 0.18
TRIM28-207ENST00000597136 AP5Z1O43299 807 aa16.18■□□□□ 0.18
TRIM28-207ENST00000597136 CYP3A5P20815 502 aa16.18■□□□□ 0.18
TRIM28-207ENST00000597136 LRPAP1P30533 357 aa16.18■□□□□ 0.18
TRIM28-207ENST00000597136 RPL9P32969 192 aaKnown RBP16.18■□□□□ 0.18
TRIM28-207ENST00000597136 MRE11P49959 708 aa16.18■□□□□ 0.18
TRIM28-207ENST00000597136 MCCD1P59942 119 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-207ENST00000597136 DLG4P78352 724 aa16.18■□□□□ 0.18
TRIM28-207ENST00000597136 TCEAL5Q5H9L2 206 aa16.18■□□□□ 0.18
TRIM28-207ENST00000597136 INTS8Q75QN2 995 aaKnown RBP16.18■□□□□ 0.18
TRIM28-207ENST00000597136 RBM23Q86U06 439 aaKnown RBP16.18■□□□□ 0.18
TRIM28-207ENST00000597136 BEST2Q8NFU1 509 aa16.18■□□□□ 0.18
TRIM28-207ENST00000597136 DDX27Q96GQ7 796 aaKnown RBP16.18■□□□□ 0.18
TRIM28-207ENST00000597136 ENTPD7Q9NQZ7 604 aa16.18■□□□□ 0.18
TRIM28-207ENST00000597136 ANO9A1A5B4 782 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 TMEM189-UBE2V1I3L0A0 370 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 PIRO00625 290 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 C2CD2LO14523 706 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 SERPINC1P01008 464 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms