RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SNTG2Q9NY99 539 aa9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 NXF1Q9UBU9 619 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 NOC2LQ9Y3T9 749 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-209ENST00000509277 ZMYM2Q9UBW7 1377 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 ZSCAN5CA6NGD5 496 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 H0YCG3 227 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 EIF3DO15371 548 aaKnown RBP eCLIP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 SMIM24O75264 130 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 TMEM191BP0C7N4 346 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 SYN1P17600 705 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 EN2P19622 333 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 CYP2C18P33260 490 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 VAMP7P51809 220 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 SESN3P58005 492 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 TLE2Q04725 743 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 SNX17Q15036 470 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 RBBP5Q15291 538 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 MAN2A1Q16706 1144 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 TRIM60Q495X7 471 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 VWA3BQ502W6 1294 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 ZNF394Q53GI3 561 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 SWT1Q5T5J6 900 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 SLC39A4Q6P5W5 647 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 MAP4K3Q8IVH8 894 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 GPD1LQ8N335 351 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 TIPINQ9BVW5 301 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 IFT122Q9HBG6 1241 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 GCNT4Q9P109 453 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 ARHGAP28Q9P2N2 729 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 GRIN2DO15399 1336 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 UMODL1Q5DID0 1318 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 CCDC189A1A4V9 331 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 BUB1O43683 1085 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 OPA1O60313 960 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 CAPN15O75808 1086 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 MYL7Q01449 175 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 ADCY1Q08828 1119 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 IFFO1Q0D2I5 559 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 PARP9Q8IXQ6 854 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 RNPC3Q96LT9 517 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 BPIFA3Q9BQP9 254 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 CELF4Q9BZC1 486 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 MCOLN1Q9GZU1 580 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 NXF3Q9H4D5 531 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 RPF1Q9H9Y2 349 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 PDLIM7Q9NR12 457 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 INTS13Q9NVM9 706 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 DMGDHQ9UI17 866 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 NFU1Q9UMS0 254 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 RANBP2P49792 3224 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 KPNA6O60684 536 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 AFPP02771 609 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 PRMT2P55345 433 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 GSCP56915 257 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 MRPS6P82932 125 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 GUCY2DQ02846 1103 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 PAK2Q13177 524 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 EPM2AIP1Q7L775 607 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 MGARPQ8TDB4 240 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 UBLCP1Q8WVY7 318 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 SPIRE2Q8WWL2 714 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 LRRC1Q9BTT6 524 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 C17orf75Q9HAS0 396 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 PRMT7Q9NVM4 692 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 ZNHIT6Q9NWK9 470 aaKnown RBP9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 ST3GAL5Q9UNP4 418 aa9.28□□□□□ -0.92
LIMCH1-209ENST00000509277 ZBBXA8MT70 800 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 ASAP2O43150 1006 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 NCK2O43639 380 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 DIAPH2O60879 1101 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 CD58P19256 250 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 EEF1GP26641 437 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 CA8P35219 290 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 MXI1P50539 228 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 MBTD1Q05BQ5 628 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 TRPC3Q13507 836 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 MAP3K21Q5TCX8 1036 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 SPOPLQ6IQ16 392 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 HASPINQ8TF76 798 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 TMEM39AQ9NV64 488 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 DCDC2CA8MYV0 355 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 ACKR2O00590 384 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 GAS2O43903 313 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 TOM1L1O75674 476 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 VIMP08670 466 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 KRT5P13647 590 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 ZNF18P17022 549 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 PCK1P35558 622 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 PIK3CAP42336 1068 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 PAFAH1B1P43034 410 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 CETN1Q12798 172 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 BFSP1Q12934 665 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 ALCAMQ13740 583 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 EXOC3L4Q17RC7 722 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 CDKAL1Q5VV42 579 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 CAPRIN2Q6IMN6 1127 aaKnown RBP9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 C8orf74Q6P047 294 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 KCTD17Q8N5Z5 321 aa9.27□□□□□ -0.93
LIMCH1-209ENST00000509277 MTMR12Q9C0I1 747 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms