RNA–Protein interactions for RNA: ENST00000380285.7

SNX1-202, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 8,119 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-202ENST00000380285 CATSPER3Q86XQ3 398 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 SUGP1Q8IWZ8 645 aaKnown RBP10.05□□□□□ -0.8
SNX1-202ENST00000380285 ACTRT1Q8TDG2 376 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 SP110Q9HB58 689 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 PLAGL2Q9UPG8 496 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 ABCA6Q8N139 1617 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 A0A0A6YYK5 440 aaPredicted RBP10.05□□□□□ -0.8
SNX1-202ENST00000380285 SLC16A4O15374 487 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 KCNN4O15554 427 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 MAP3K13O43283 966 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 FCER1AP12319 257 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 EIF2AK2P19525 551 aaKnown RBP10.05□□□□□ -0.8
SNX1-202ENST00000380285 PTK2BQ14289 1009 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 TTC23LQ6PF05 361 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 BARGINQ6ZT62 677 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 CLEC4FQ8N1N0 589 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 ARL8AQ96BM9 186 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 PCDHB2Q9Y5E7 798 aa10.05□□□□□ -0.8
SNX1-202ENST00000380285 POLBP06746 335 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 SBK1Q52WX2 424 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 HAUS6Q7Z4H7 955 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 GJB4Q9NTQ9 266 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 ZNF839A8K0R7 811 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 PJA2O43164 708 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 RASSF9O75901 435 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 CTCFP49711 727 aaPredicted RBP10.04□□□□□ -0.8
SNX1-202ENST00000380285 FXR2P51116 673 aaKnown RBP eCLIP10.04□□□□□ -0.8
SNX1-202ENST00000380285 CSTF3Q12996 717 aaKnown RBP10.04□□□□□ -0.8
SNX1-202ENST00000380285 KIAA1841Q6NSI8 718 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 CATSPER4Q7RTX7 472 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 ARHGEF1Q92888 912 aaKnown RBP10.04□□□□□ -0.8
SNX1-202ENST00000380285 E2F7Q96AV8 911 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 MED15Q96RN5 788 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 FHOD1Q9Y613 1164 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 DLC1Q96QB1 1528 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 GSNP06396 782 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 MAPK7Q13164 816 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 RRM2BQ7LG56 351 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 ADGRF4Q8IZF3 695 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 RBBP8Q99708 897 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 FAM192AQ9GZU8 254 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 A8MXQ7 604 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 TM9SF1O15321 606 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 SLC4A1P02730 911 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 HLA-DPA1P20036 260 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 TRMT5Q32P41 509 aaKnown RBP10.04□□□□□ -0.8
SNX1-202ENST00000380285 LVRNQ6Q4G3 990 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 PGBD4Q96DM1 585 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 NAT9Q9BTE0 207 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 DHX35Q9H5Z1 703 aaKnown RBP10.04□□□□□ -0.8
SNX1-202ENST00000380285 VPS9D1Q9Y2B5 631 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 FAM32AQ9Y421 112 aaKnown RBP10.04□□□□□ -0.8
SNX1-202ENST00000380285 TULP4Q9NRJ4 1543 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 ITSN1Q15811 1721 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 SRRM3A6NNA2 597 aaPredicted RBP10.04□□□□□ -0.8
SNX1-202ENST00000380285 PLA2G4AP47712 749 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 HABP4Q5JVS0 413 aaKnown RBP10.04□□□□□ -0.8
SNX1-202ENST00000380285 TEKT4Q8WW24 435 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 TMBIM4Q9HC24 238 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 INO80Q9ULG1 1556 aaPredicted RBP10.04□□□□□ -0.8
SNX1-202ENST00000380285 SORBS3O60504 671 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 KCNA2P16389 499 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 PSMA4P25789 261 aaKnown RBP10.04□□□□□ -0.8
SNX1-202ENST00000380285 DMC1Q14565 340 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 FAM9CQ8IZT9 166 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 CCDC24Q8N4L8 307 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 POLR3FQ9H1D9 316 aaPredicted RBP10.04□□□□□ -0.8
SNX1-202ENST00000380285 RIC8BQ9NVN3 520 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 TUBGCP4Q9UGJ1 667 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 HERC5Q9UII4 1024 aaKnown RBP10.04□□□□□ -0.8
SNX1-202ENST00000380285 USP21Q9UK80 565 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 FCGR1AP12314 374 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 GPR141Q7Z602 305 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 REXO1L1PQ8IX06 675 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 RXFP1Q9HBX9 757 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 DCDC2Q9UHG0 476 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 L1RE1Q9UN81 338 aa10.04□□□□□ -0.8
SNX1-202ENST00000380285 SLCO1B7G3V0H7 640 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 RARGP13631 454 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 STIP1P31948 543 aaKnown RBP10.03□□□□□ -0.8
SNX1-202ENST00000380285 OSTNP61366 133 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 ZNF746Q6NUN9 644 aaPredicted RBP10.03□□□□□ -0.8
SNX1-202ENST00000380285 C3orf62Q6ZUJ4 267 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 RTKN2Q8IZC4 609 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 TAGAPQ8N103 731 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 EIF1ADQ8N9N8 165 aaKnown RBP10.03□□□□□ -0.8
SNX1-202ENST00000380285 MMADHCQ9H3L0 296 aaPredicted RBP10.03□□□□□ -0.8
SNX1-202ENST00000380285 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.03□□□□□ -0.8
SNX1-202ENST00000380285 PCSK1NQ9UHG2 260 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 DGAT1O75907 488 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 COILP38432 576 aaPredicted RBP10.03□□□□□ -0.8
SNX1-202ENST00000380285 KCNA1Q09470 495 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 WASHC2DQ5SRD0 308 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 CENPPQ6IPU0 288 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 CYGBQ8WWM9 190 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 RSPH1Q8WYR4 309 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 TUBGCP3Q96CW5 907 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 EGFL8Q99944 293 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 TMEM8AQ9HCN3 771 aa10.03□□□□□ -0.8
SNX1-202ENST00000380285 APRTP07741 180 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 138.7 ms