RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 SEPHS1P49903 392 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 DNM2P50570 870 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 SMAD3P84022 425 aaKnown RBP6.99□□□□□ -1.29
VPS29-210ENST00000552130 CREMQ03060 361 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 DUSP4Q13115 394 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 PAK1Q13153 545 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 DAG1Q14118 895 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 RAPH1Q70E73 1250 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 B4GALNT4Q76KP1 1039 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 NLRX1Q86UT6 975 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 C2orf69Q8N8R5 385 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 TOR1AIP2Q8NFQ8 470 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 RSAD2Q8WXG1 361 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 ZNF566Q969W8 418 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 SYTL4Q96C24 671 aaPredicted RBP6.99□□□□□ -1.29
VPS29-210ENST00000552130 TSGA13Q96PP4 275 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 AGXT2Q9BYV1 514 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 MKRN2Q9H000 416 aaKnown RBP6.99□□□□□ -1.29
VPS29-210ENST00000552130 C2orf40Q9H1Z8 148 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 SPON1Q9HCB6 807 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 TMOD4Q9NZQ9 345 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 GPR160Q9UJ42 338 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 GTF3C4Q9UKN8 822 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 STXBP5LQ9Y2K9 1186 aa6.99□□□□□ -1.29
VPS29-210ENST00000552130 MTF2Q9Y483 593 aaPredicted RBP6.99□□□□□ -1.29
VPS29-210ENST00000552130 ZFP37Q9Y6Q3 630 aaPredicted RBP6.99□□□□□ -1.29
VPS29-210ENST00000552130 PI4K2BG5E9Z4 385 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 IL11P20809 199 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 CTSSP25774 331 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 EEF1GP26641 437 aaKnown RBP6.98□□□□□ -1.29
VPS29-210ENST00000552130 GBP1P32455 592 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 HNF4AP41235 474 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 CLCN2P51788 898 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 EVCP57679 992 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 VAMP2P63027 116 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 AP1B1Q10567 949 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 PTK2BQ14289 1009 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 DLGAP5Q15398 846 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 ADCK5Q3MIX3 580 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 SETMARQ53H47 684 aaPredicted RBP6.98□□□□□ -1.29
VPS29-210ENST00000552130 FAM47CQ5HY64 1035 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 UBXN11Q5T124 520 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 KLHDC7AQ5VTJ3 777 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 KAZNQ674X7 775 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 TMEM132EQ6IEE7 984 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 RSPO2Q6UXX9 243 aaPredicted RBP6.98□□□□□ -1.29
VPS29-210ENST00000552130 CCAR2Q8N163 923 aaKnown RBP6.98□□□□□ -1.29
VPS29-210ENST00000552130 TRIML1Q8N9V2 468 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 OR10H5Q8NGA6 315 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 GOT1L1Q8NHS2 421 aaPredicted RBP6.98□□□□□ -1.29
VPS29-210ENST00000552130 KLHDC4Q8TBB5 520 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 SPPL3Q8TCT6 385 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 PANK1Q8TE04 598 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 STON2Q8WXE9 905 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 RIN2Q8WYP3 895 aaPredicted RBP6.98□□□□□ -1.29
VPS29-210ENST00000552130 ZUFSPQ96AP4 578 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 NSUN4Q96CB9 384 aaKnown RBP6.98□□□□□ -1.29
VPS29-210ENST00000552130 C18orf8Q96DM3 657 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 SIGLEC10Q96LC7 697 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 EYA3Q99504 573 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 ALG1Q9BT22 464 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 PI4K2AQ9BTU6 479 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 TRIM6Q9C030 488 aaPredicted RBP6.98□□□□□ -1.29
VPS29-210ENST00000552130 VPS33BQ9H267 617 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 GP6Q9HCN6 339 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 EPB41L4AQ9HCS5 686 aaPredicted RBP6.98□□□□□ -1.29
VPS29-210ENST00000552130 TRMT1Q9NXH9 659 aaKnown RBP6.98□□□□□ -1.29
VPS29-210ENST00000552130 RABL2AQ9UBK7 228 aaPredicted RBP6.98□□□□□ -1.29
VPS29-210ENST00000552130 ADD3Q9UEY8 706 aaKnown RBP6.98□□□□□ -1.29
VPS29-210ENST00000552130 EIF2B4Q9UI10 523 aaKnown RBP6.98□□□□□ -1.29
VPS29-210ENST00000552130 SLC39A10Q9ULF5 831 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 ARHGAP26Q9UNA1 814 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 PCDHGB5Q9Y5G0 923 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 SPO11Q9Y5K1 396 aa6.98□□□□□ -1.29
VPS29-210ENST00000552130 CCDC196A0A1B0GTZ2 297 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 A0A1W2PPC4 97 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 SHISA3A0PJX4 238 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 OR14I1A6ND48 311 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 OTOL1A6NHN0 477 aaPredicted RBP6.97□□□□□ -1.29
VPS29-210ENST00000552130 PES1O00541 588 aaKnown RBP6.97□□□□□ -1.29
VPS29-210ENST00000552130 SHOXO15266 292 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 KRT37O76014 449 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 GOSR1O95249 250 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 PORP16435 677 aaPredicted RBP6.97□□□□□ -1.29
VPS29-210ENST00000552130 PI3P19957 117 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 ENPP1P22413 925 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 CHMP24386 653 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 ATP5F1P24539 256 aaPredicted RBP6.97□□□□□ -1.29
VPS29-210ENST00000552130 GALK1P51570 392 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 HMGN5P82970 282 aaKnown RBP6.97□□□□□ -1.29
VPS29-210ENST00000552130 IFT88Q13099 833 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 TSTQ16762 297 aaKnown RBP6.97□□□□□ -1.29
VPS29-210ENST00000552130 MMEL1Q495T6 779 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 ODF2Q5BJF6 829 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 ZNF362Q5T0B9 420 aaPredicted RBP6.97□□□□□ -1.29
VPS29-210ENST00000552130 LRCH2Q5VUJ6 765 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 FRMD7Q6ZUT3 714 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 OTOP1Q7RTM1 612 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 C2CD5Q86YS7 1000 aa6.97□□□□□ -1.29
VPS29-210ENST00000552130 CISD2Q8N5K1 135 aaKnown RBP6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms