RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 SLC34A1Q06495 639 aa16.96■□□□□ 0.3
NPHP3-201ENST00000337331 LBRQ14739 615 aaKnown RBP16.96■□□□□ 0.3
NPHP3-201ENST00000337331 SF3B3Q15393 1217 aaKnown RBP16.96■□□□□ 0.3
NPHP3-201ENST00000337331 KRT80Q6KB66 452 aa16.96■□□□□ 0.3
NPHP3-201ENST00000337331 TRIM67Q6ZTA4 783 aa16.96■□□□□ 0.3
NPHP3-201ENST00000337331 DPP9Q86TI2 863 aa16.96■□□□□ 0.3
NPHP3-201ENST00000337331 TTC17Q96AE7 1141 aa16.96■□□□□ 0.3
NPHP3-201ENST00000337331 SH2D3AQ9BRG2 576 aa16.96■□□□□ 0.3
NPHP3-201ENST00000337331 SPC25Q9HBM1 224 aa16.96■□□□□ 0.3
NPHP3-201ENST00000337331 TBC1D22BQ9NU19 505 aa16.96■□□□□ 0.3
NPHP3-201ENST00000337331 NMRK1Q9NWW6 199 aa16.96■□□□□ 0.3
NPHP3-201ENST00000337331 B2RBV5 119 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 LSM1O15116 133 aaKnown RBP16.95■□□□□ 0.3
NPHP3-201ENST00000337331 RARAP10276 462 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 CCNFP41002 786 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 JAK3P52333 1124 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 TRIP10Q15642 601 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 ZNF667Q5HYK9 610 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 WASHC2DQ5SRD0 308 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 ARHGAP27Q6ZUM4 889 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 FRMD5Q7Z6J6 570 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 TMCO1Q9UM00 188 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.95■□□□□ 0.3
NPHP3-201ENST00000337331 PDXKO00764 312 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 SLC5A9Q2M3M2 681 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 TAF1BQ53T94 588 aaPredicted RBP16.95■□□□□ 0.3
NPHP3-201ENST00000337331 L3MBTL3Q96JM7 780 aaPredicted RBP16.95■□□□□ 0.3
NPHP3-201ENST00000337331 PHTF1Q9UMS5 762 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 GOLGA8MH3BSY2 632 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 LDHAP00338 332 aaKnown RBP16.95■□□□□ 0.3
NPHP3-201ENST00000337331 SOX5P35711 763 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 ZNF543Q08ER8 600 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 SUPT20HL1Q3ZLR7 823 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 KRT39Q6A163 491 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 GFM2Q969S9 779 aaKnown RBP16.95■□□□□ 0.3
NPHP3-201ENST00000337331 CFAP36Q96G28 342 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 ERGIC2Q96RQ1 377 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 LRRC4Q9HBW1 653 aa16.95■□□□□ 0.3
NPHP3-201ENST00000337331 ENO1P06733 434 aaKnown RBP16.94■□□□□ 0.3
NPHP3-201ENST00000337331 KCNJ1P48048 391 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 AFF2P51816 1311 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 DMPKQ09013 629 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 MEA1Q16626 185 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 Q3C1V9 767 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 CNTNAP5Q8WYK1 1306 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 CASP10Q92851 521 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 MTBPQ96DY7 904 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 C9orf72Q96LT7 481 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 NDEL1Q9GZM8 345 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 RPF1Q9H9Y2 349 aaKnown RBP16.94■□□□□ 0.3
NPHP3-201ENST00000337331 SUCLA2Q9P2R7 463 aaPredicted RBP16.94■□□□□ 0.3
NPHP3-201ENST00000337331 SLC12A6Q9UHW9 1150 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 ABLIM1O14639 778 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 OVGP1Q12889 678 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 HSPH1Q92598 858 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 CENPTQ96BT3 561 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 ZNF184Q99676 751 aaPredicted RBP16.94■□□□□ 0.3
NPHP3-201ENST00000337331 SNX25Q9H3E2 840 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 CYP4F11Q9HBI6 524 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 ADGRB2O60241 1585 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 DLC1Q96QB1 1528 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 E2F6O75461 281 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 UCHL3P15374 230 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 SURF1Q15526 300 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 ANO5Q75V66 913 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 HAUS6Q7Z4H7 955 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 DRC3Q9H069 523 aa16.94■□□□□ 0.3
NPHP3-201ENST00000337331 KRT76Q01546 638 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 MTDHQ86UE4 582 aaKnown RBP16.93■□□□□ 0.3
NPHP3-201ENST00000337331 C1orf54Q8WWF1 131 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 USP6NLQ92738 828 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 HDAC11Q96DB2 347 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 TMA7Q9Y2S6 64 aaKnown RBP16.93■□□□□ 0.3
NPHP3-201ENST00000337331 IQANK1A0A1B0GTG1 560 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 A0A1W2PQJ5 194 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 KDM1AO60341 852 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 EYA4O95677 639 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 CEP55Q53EZ4 464 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 CIAPIN1Q6FI81 312 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 LRGUKQ96M69 825 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 MED15Q96RN5 788 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 PALMDQ9NP74 551 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 TLK1Q9UKI8 766 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 FAM47DPA6NHR8 397 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 KRT37O76014 449 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 PTPN4P29074 926 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 GALK1P51570 392 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 GALCP54803 685 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 ARL4CP56559 192 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 PSMC1P62191 440 aaKnown RBP16.93■□□□□ 0.3
NPHP3-201ENST00000337331 DHX34Q14147 1143 aaKnown RBP16.93■□□□□ 0.3
NPHP3-201ENST00000337331 MEI1Q5TIA1 1274 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 NLRP9Q7RTR0 991 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP16.93■□□□□ 0.36e-7■■■■■ 139.2
NPHP3-201ENST00000337331 UBE2OQ9C0C9 1292 aaKnown RBP16.93■□□□□ 0.3
NPHP3-201ENST00000337331 UNC45AQ9H3U1 944 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 COMMD3-BMI1R4GMX3 469 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 KRT36O76013 467 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 NLRP7Q8WX94 980 aa16.93■□□□□ 0.3
NPHP3-201ENST00000337331 THAP11Q96EK4 314 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms