RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 TRIM72Q6ZMU5 477 aa14.42□□□□□ -0.1
SHMT2-222ENST00000555774 CCDC197Q8NCU1 140 aa14.42□□□□□ -0.1
SHMT2-222ENST00000555774 MDM1Q8TC05 714 aa14.42□□□□□ -0.1
SHMT2-222ENST00000555774 CDHR1Q96JP9 859 aa14.42□□□□□ -0.1
SHMT2-222ENST00000555774 IFT74Q96LB3 600 aa14.42□□□□□ -0.1
SHMT2-222ENST00000555774 INTS9Q9NV88 658 aaKnown RBP14.42□□□□□ -0.1
SHMT2-222ENST00000555774 GABBR1Q9UBS5 961 aa14.42□□□□□ -0.1
SHMT2-222ENST00000555774 HNRNPDLO14979 420 aaKnown RBP14.41□□□□□ -0.1
SHMT2-222ENST00000555774 EXTL3O43909 919 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 FGFR4P22455 802 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 KRT17Q04695 432 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 AUHQ13825 339 aaKnown RBP14.41□□□□□ -0.1
SHMT2-222ENST00000555774 PSMD6Q15008 389 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 RHBDF2Q6PJF5 856 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 NSMFQ6X4W1 530 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 ANKS4BQ8N8V4 417 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 SNF8Q96H20 258 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 SERPINB12Q96P63 405 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 NSRP1Q9H0G5 558 aaKnown RBP14.41□□□□□ -0.1
SHMT2-222ENST00000555774 ATP6V0A4Q9HBG4 840 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 MYOZ2Q9NPC6 264 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 STK32BQ9NY57 414 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 ARHGAP28Q9P2N2 729 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 PTPN22Q9Y2R2 807 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 EP400Q96L91 3159 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 GAS8O95995 478 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 DLATP10515 647 aaKnown RBP14.41□□□□□ -0.1
SHMT2-222ENST00000555774 OAZ1P54368 228 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 NBPF9Q3BBW0 867 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 WDR44Q5JSH3 913 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 CPNE8Q86YQ8 564 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 TEPSINQ96N21 525 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 OSBPL7Q9BZF2 842 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 RPAP3Q9H6T3 665 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-222ENST00000555774 UTP3Q9NQZ2 479 aaKnown RBP eCLIP14.41□□□□□ -0.13e-6■■■■■ 44
SHMT2-222ENST00000555774 RNF146Q9NTX7 359 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 MYPNQ86TC9 1320 aa14.41□□□□□ -0.1
SHMT2-222ENST00000555774 MROH7Q68CQ1 1323 aa14.4□□□□□ -0.1
SHMT2-222ENST00000555774 VWA5AO00534 786 aa14.4□□□□□ -0.1
SHMT2-222ENST00000555774 PSTPIP1O43586 416 aa14.4□□□□□ -0.1
SHMT2-222ENST00000555774 STAM2O75886 525 aa14.4□□□□□ -0.1
SHMT2-222ENST00000555774 RASSF9O75901 435 aa14.4□□□□□ -0.1
SHMT2-222ENST00000555774 CYP1A1P04798 512 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-222ENST00000555774 NR3C2P08235 984 aa14.4□□□□□ -0.1
SHMT2-222ENST00000555774 KCNA2P16389 499 aa14.4□□□□□ -0.1
SHMT2-222ENST00000555774 KCNJ1P48048 391 aa14.4□□□□□ -0.1
SHMT2-222ENST00000555774 IFI35P80217 286 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-222ENST00000555774 TBC1D10BQ4KMP7 808 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-222ENST00000555774 ZNF772Q68DY9 489 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-222ENST00000555774 BBOF1Q8ND07 529 aa14.4□□□□□ -0.1
SHMT2-222ENST00000555774 EPS8L3Q8TE67 593 aaKnown RBP14.4□□□□□ -0.1
SHMT2-222ENST00000555774 CCDC114Q96M63 670 aa14.4□□□□□ -0.1
SHMT2-222ENST00000555774 STYXL1Q9Y6J8 313 aa14.4□□□□□ -0.1
SHMT2-222ENST00000555774 ADGRA3Q8IWK6 1321 aa14.4□□□□□ -0.1
SHMT2-222ENST00000555774 ZNF862O60290 1169 aa14.4□□□□□ -0.11
SHMT2-222ENST00000555774 SORBS3O60504 671 aa14.4□□□□□ -0.11
SHMT2-222ENST00000555774 PROSCO94903 275 aa14.4□□□□□ -0.11
SHMT2-222ENST00000555774 NSFP46459 744 aaKnown RBP14.4□□□□□ -0.11
SHMT2-222ENST00000555774 LIN9Q5TKA1 542 aa14.4□□□□□ -0.11
SHMT2-222ENST00000555774 PIGWQ7Z7B1 504 aa14.4□□□□□ -0.11
SHMT2-222ENST00000555774 CCT6BQ92526 530 aa14.4□□□□□ -0.11
SHMT2-222ENST00000555774 BICD1Q96G01 975 aa14.4□□□□□ -0.11
SHMT2-222ENST00000555774 VCPIP1Q96JH7 1222 aa14.4□□□□□ -0.11
SHMT2-222ENST00000555774 FAM213AQ9BRX8 229 aa14.4□□□□□ -0.11
SHMT2-222ENST00000555774 DCLK3Q9C098 648 aa14.4□□□□□ -0.11
SHMT2-222ENST00000555774 CDC42EP4Q9H3Q1 356 aaKnown RBP14.4□□□□□ -0.11
SHMT2-222ENST00000555774 ASIC3Q9UHC3 531 aa14.4□□□□□ -0.11
SHMT2-222ENST00000555774 TCEA3O75764 348 aa14.39□□□□□ -0.11
SHMT2-222ENST00000555774 POTEJP0CG39 1038 aa14.39□□□□□ -0.11
SHMT2-222ENST00000555774 GTF2A1P52655 376 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-222ENST00000555774 CXCL9Q07325 125 aa14.39□□□□□ -0.11
SHMT2-222ENST00000555774 BAATQ14032 418 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-222ENST00000555774 ZACNQ401N2 412 aa14.39□□□□□ -0.11
SHMT2-222ENST00000555774 CEP128Q6ZU80 1094 aa14.39□□□□□ -0.11
SHMT2-222ENST00000555774 ATL2Q8NHH9 583 aa14.39□□□□□ -0.11
SHMT2-222ENST00000555774 NSUN6Q8TEA1 469 aaKnown RBP14.39□□□□□ -0.11
SHMT2-222ENST00000555774 C1orf54Q8WWF1 131 aa14.39□□□□□ -0.11
SHMT2-222ENST00000555774 DDX27Q96GQ7 796 aaKnown RBP14.39□□□□□ -0.11
SHMT2-222ENST00000555774 TRAIPQ9BWF2 469 aa14.39□□□□□ -0.11
SHMT2-222ENST00000555774 XPNPEP1Q9NQW7 623 aa14.39□□□□□ -0.11
SHMT2-222ENST00000555774 CYP26B1Q9NR63 512 aa14.39□□□□□ -0.11
SHMT2-222ENST00000555774 SMIM23A6NLE4 172 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 GSTA1P08263 222 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 ATF2P15336 505 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 LIG4P49917 911 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 MTMR2Q13614 643 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 CIAPIN1Q6FI81 312 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 MON1BQ7L1V2 547 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 FNBP1Q96RU3 617 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 MRPL47Q9HD33 250 aaKnown RBP14.38□□□□□ -0.11
SHMT2-222ENST00000555774 JPH1Q9HDC5 661 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-222ENST00000555774 A1CFQ9NQ94 594 aaKnown RBP14.38□□□□□ -0.11
SHMT2-222ENST00000555774 AAASQ9NRG9 546 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 SAMD15Q9P1V8 674 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 CCT8L1PA6NM43 557 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 TP73O15350 636 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 DNAJC8O75937 253 aaPredicted RBP14.38□□□□□ -0.11
SHMT2-222ENST00000555774 PIGRP01833 764 aa14.38□□□□□ -0.11
SHMT2-222ENST00000555774 C4BPAP04003 597 aaKnown RBP14.38□□□□□ -0.11
SHMT2-222ENST00000555774 RRM1P23921 792 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms