RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 B2RBV5 119 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 DDX39AO00148 427 aaKnown RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 MEIS1O00470 390 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 ENPP3O14638 875 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 EXOC3O60645 756 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 RPL13P26373 211 aaKnown RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 COPB2P35606 906 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 PWP1Q13610 501 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 PDE1CQ14123 709 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 MRPL14Q6P1L8 145 aaKnown RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 ALKBH5Q6P6C2 394 aaKnown RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 GK5Q6ZS86 529 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 UBL4BQ8N7F7 174 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 HIPK4Q8NE63 616 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 SUPT20HQ8NEM7 779 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 ERMNQ8TAM6 284 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 SPATA20Q8TB22 786 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 EPN3Q9H201 632 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 CRISPLD1Q9H336 500 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 TAF1DQ9H5J8 278 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 NMRK2Q9NPI5 230 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 ZNF277Q9NRM2 450 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 G3BP2Q9UN86 482 aaKnown RBP5.88□□□□□ -1.47
LIMA1-203ENST00000547825 L3MBTL1Q9Y468 752 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 USP34Q70CQ2 3546 aa5.88□□□□□ -1.47
LIMA1-203ENST00000547825 PITPNM2Q9BZ72 1349 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 ARHGAP42A6NI28 874 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 RASGRF2O14827 1237 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 ATP2A1O14983 1001 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 PARNO95453 639 aaKnown RBP5.87□□□□□ -1.47
LIMA1-203ENST00000547825 NR2F2P24468 414 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 LONP1P36776 959 aaKnown RBP5.87□□□□□ -1.47
LIMA1-203ENST00000547825 CXCL9Q07325 125 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 PABPC4Q13310 644 aaKnown RBP eCLIP5.87□□□□□ -1.47
LIMA1-203ENST00000547825 RCN2Q14257 317 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 UBE3CQ15386 1083 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 EXOC3L4Q17RC7 722 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 CFAP157Q5JU67 520 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 AGMOQ6ZNB7 445 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 MYCT1Q8N699 235 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 CEP120Q8N960 986 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 WHAMMQ8TF30 809 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 NSMCE1Q8WV22 266 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 NKD1Q969G9 470 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 ABTB1Q969K4 478 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-203ENST00000547825 RILPQ96NA2 401 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 MRIQ9BWK5 157 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 PANK4Q9NVE7 773 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 SIRPGQ9P1W8 387 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 PNMA2Q9UL42 364 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 PCDHA12Q9UN75 941 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 CAPN6Q9Y6Q1 641 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 COL11A1P12107 1806 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-203ENST00000547825 PFDN1O60925 122 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 TOMM70O94826 608 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 HARSP12081 509 aaKnown RBP5.87□□□□□ -1.47
LIMA1-203ENST00000547825 PPP2R2AP63151 447 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 PTPN11Q06124 597 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-203ENST00000547825 SQSTM1Q13501 440 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 MAN2A1Q16706 1144 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 NBPF9Q3BBW0 867 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 USH1GQ495M9 461 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 NT5DC1Q5TFE4 455 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 KAZNQ674X7 775 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 ANKRD40Q6AI12 368 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 CERS5Q8N5B7 392 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 GRIN3AQ8TCU5 1115 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 ZNF384Q8TF68 577 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 CUL5Q93034 780 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 CYFIP2Q96F07 1278 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 ZNF512BQ96KM6 892 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-203ENST00000547825 OSBPL1AQ9BXW6 950 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 AZI2Q9H6S1 392 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 KIF9Q9HAQ2 790 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 DISC1Q9NRI5 854 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 GPRC5DQ9NZD1 345 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 ZNRF3Q9ULT6 936 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 FRMD4BQ9Y2L6 1034 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 KHNYNO15037 678 aaKnown RBP5.87□□□□□ -1.47
LIMA1-203ENST00000547825 UPP2O95045 317 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 LIFRP42702 1097 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 RANBP1P43487 201 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 CCINQ13939 588 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 RASGRF1Q13972 1273 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 AOC3Q16853 763 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 CYB5D1Q6P9G0 228 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 CTAGE3PQ8IX95 158 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 LRRC47Q8N1G4 583 aaKnown RBP5.87□□□□□ -1.47
LIMA1-203ENST00000547825 MSANTD4Q8NCY6 345 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 NEK9Q8TD19 979 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 CCDC127Q96BQ5 260 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 DYNLL2Q96FJ2 89 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 DHTKD1Q96HY7 919 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-203ENST00000547825 FAM126AQ9BYI3 521 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-203ENST00000547825 CELF4Q9BZC1 486 aaKnown RBP5.87□□□□□ -1.47
LIMA1-203ENST00000547825 ZMYND12Q9H0C1 365 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 MUC3BQ9H195 1237 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 PLCB1Q9NQ66 1216 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 RNF181Q9P0P0 153 aa5.87□□□□□ -1.47
LIMA1-203ENST00000547825 MYH7BA7E2Y1 1941 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 185.1 ms