RNA–Protein interactions for RNA: ENST00000258772.9

DDX56-201, Transcript of DEAD-box helicase 56, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX56, Length 2,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-201ENST00000258772 LONRF1Q17RB8 773 aa16.28■□□□□ 0.2
DDX56-201ENST00000258772 CCDC38Q502W7 563 aa16.28■□□□□ 0.2
DDX56-201ENST00000258772 OTUD6AQ7L8S5 288 aa16.28■□□□□ 0.2
DDX56-201ENST00000258772 FUKQ8N0W3 1084 aa16.28■□□□□ 0.2
DDX56-201ENST00000258772 MAIP1Q8WWC4 291 aa16.28■□□□□ 0.2
DDX56-201ENST00000258772 CEP170P1Q96L14 293 aa16.28■□□□□ 0.2
DDX56-201ENST00000258772 MTFR1LQ9H019 292 aa16.28■□□□□ 0.2
DDX56-201ENST00000258772 CCDC113Q9H0I3 377 aa16.28■□□□□ 0.2
DDX56-201ENST00000258772 AVENQ9NQS1 362 aaPredicted RBP16.28■□□□□ 0.2
DDX56-201ENST00000258772 ZNF277Q9NRM2 450 aaPredicted RBP16.28■□□□□ 0.2
DDX56-201ENST00000258772 ASIC3Q9UHC3 531 aa16.28■□□□□ 0.2
DDX56-201ENST00000258772 MROH7Q68CQ1 1323 aa16.27■□□□□ 0.2
DDX56-201ENST00000258772 ZC3H11AO75152 810 aaKnown RBP eCLIP16.27■□□□□ 0.2
DDX56-201ENST00000258772 ITIH4Q14624 930 aa16.27■□□□□ 0.2
DDX56-201ENST00000258772 NBPF9Q3BBW0 867 aa16.27■□□□□ 0.2
DDX56-201ENST00000258772 ARHGEF16Q5VV41 709 aa16.27■□□□□ 0.2
DDX56-201ENST00000258772 TAX1BP1Q86VP1 789 aa16.27■□□□□ 0.2
DDX56-201ENST00000258772 RDM1Q8NG50 284 aa16.27■□□□□ 0.2
DDX56-201ENST00000258772 CPA5Q8WXQ8 436 aa16.27■□□□□ 0.2
DDX56-201ENST00000258772 FAM81BQ96LP2 452 aa16.27■□□□□ 0.2
DDX56-201ENST00000258772 HERPUD2Q9BSE4 406 aa16.27■□□□□ 0.2
DDX56-201ENST00000258772 KIAA1683Q9H0B3 1180 aa16.27■□□□□ 0.2
DDX56-201ENST00000258772 SCAF8Q9UPN6 1271 aaKnown RBP16.27■□□□□ 0.2
DDX56-201ENST00000258772 ADGRA3Q8IWK6 1321 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 WNT10BO00744 389 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 HNRNPDLO14979 420 aaKnown RBP16.27■□□□□ 0.19
DDX56-201ENST00000258772 ZNF862O60290 1169 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 ACSL3O95573 720 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 GARTP22102 1010 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 RRM1P23921 792 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 CHKAP35790 457 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 SLC1A1P43005 524 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 ENPEPQ07075 957 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 BRDTQ58F21 947 aaPredicted RBP16.27■□□□□ 0.19
DDX56-201ENST00000258772 SYDE1Q6ZW31 735 aaPredicted RBP16.27■□□□□ 0.19
DDX56-201ENST00000258772 RTKN2Q8IZC4 609 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 ATG4AQ8WYN0 398 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 ZNF516Q92618 1163 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 SNF8Q96H20 258 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 FAM84AQ96KN4 292 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 SERPINB12Q96P63 405 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 FAM213AQ9BRX8 229 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 GABBR1Q9UBS5 961 aa16.27■□□□□ 0.19
DDX56-201ENST00000258772 MYPNQ86TC9 1320 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 COL4A5P29400 1685 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 VIMP08670 466 aaKnown RBP16.26■□□□□ 0.19
DDX56-201ENST00000258772 IFNAR2P48551 515 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 XRCC4Q13426 336 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 PTK6Q13882 451 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 C15orf39Q6ZRI6 1047 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 NLRX1Q86UT6 975 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 AGBL3Q8NEM8 1001 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 DDX27Q96GQ7 796 aaKnown RBP16.26■□□□□ 0.19
DDX56-201ENST00000258772 ZBED3Q96IU2 234 aaPredicted RBP16.26■□□□□ 0.19
DDX56-201ENST00000258772 ELAC2Q9BQ52 826 aaKnown RBP16.26■□□□□ 0.19
DDX56-201ENST00000258772 SENP7Q9BQF6 1050 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 DCLK3Q9C098 648 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 HOMER3Q9NSC5 361 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 HAUS2Q9NVX0 235 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 SAMD15Q9P1V8 674 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 PCDHB2Q9Y5E7 798 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 KIAA1217Q5T5P2 1943 aa16.26■□□□□ 0.19
DDX56-201ENST00000258772 DNAJC8O75937 253 aaPredicted RBP16.25■□□□□ 0.19
DDX56-201ENST00000258772 STBD1O95210 358 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 MYBL1P10243 752 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 MAN1A1P33908 653 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 CYB5D1Q6P9G0 228 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 PHLDB2Q86SQ0 1253 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 ZNF677Q86XU0 584 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 ATL2Q8NHH9 583 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 IPO4Q8TEX9 1081 aaKnown RBP16.25■□□□□ 0.19
DDX56-201ENST00000258772 GRK7Q8WTQ7 553 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 ARHGEF2Q92974 986 aaKnown RBP16.25■□□□□ 0.19
DDX56-201ENST00000258772 PDLIM7Q9NR12 457 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 C1orf112Q9NSG2 853 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.25■□□□□ 0.19
DDX56-201ENST00000258772 CTDP1Q9Y5B0 961 aaPredicted RBP16.25■□□□□ 0.19
DDX56-201ENST00000258772 CHUKO15111 745 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 TTC4O95801 387 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 ITGA8P53708 1063 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 SF3A3Q12874 501 aaKnown RBP eCLIP16.25■□□□□ 0.191e-6■■■□□ 19.1
DDX56-201ENST00000258772 TRIP13Q15645 432 aaPredicted RBP16.25■□□□□ 0.19
DDX56-201ENST00000258772 VSIG10LQ86VR7 867 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 TRIM11Q96F44 468 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 SGSM3Q96HU1 749 aa16.25■□□□□ 0.19
DDX56-201ENST00000258772 A1CFQ9NQ94 594 aaKnown RBP16.25■□□□□ 0.19
DDX56-201ENST00000258772 FER1L6Q2WGJ9 1857 aa16.24■□□□□ 0.19
DDX56-201ENST00000258772 ZBED4O75132 1171 aa16.24■□□□□ 0.19
DDX56-201ENST00000258772 GAS8O95995 478 aa16.24■□□□□ 0.19
DDX56-201ENST00000258772 KYNUQ16719 465 aa16.24■□□□□ 0.19
DDX56-201ENST00000258772 C2CD6Q53TS8 623 aa16.24■□□□□ 0.19
DDX56-201ENST00000258772 LLGL2Q6P1M3 1020 aa16.24■□□□□ 0.19
DDX56-201ENST00000258772 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.24■□□□□ 0.19
DDX56-201ENST00000258772 TAS1R3Q7RTX0 852 aa16.24■□□□□ 0.19
DDX56-201ENST00000258772 PARP9Q8IXQ6 854 aa16.24■□□□□ 0.19
DDX56-201ENST00000258772 TTLL6Q8N841 843 aa16.24■□□□□ 0.19
DDX56-201ENST00000258772 BICD1Q96G01 975 aa16.24■□□□□ 0.19
DDX56-201ENST00000258772 CD248Q9HCU0 757 aa16.24■□□□□ 0.19
DDX56-201ENST00000258772 XPNPEP1Q9NQW7 623 aa16.24■□□□□ 0.19
DDX56-201ENST00000258772 R3HDM2Q9Y2K5 976 aaKnown RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms